public void run(ImageProcessor ip) {

    dimz = stack.getSize();
    dimy = stack.getWidth();
    dimx = stack.getHeight();

    SaveDialog sd = new SaveDialog("Save Measurements as Text...", "res", ".dat");
    String name = sd.getFileName();
    if (name == null) return;

    String directory = sd.getDirectory();

    nb = calculnb(stack); // -1;
    IJ.showStatus("Measure parameters for the " + nb + " objects ...");
    if (nb < 1) {
      IJ.showMessage("volume must be labeled");
    } else {
      double[] volume_m = new double[nb];
      int[] volume_p = new int[nb];
      double[] surface = new double[nb];
      double[] surfacenb = new double[nb];
      double[][][] I = new double[3][3][nb];
      double[][] J = new double[3][nb];
      double[][][] dir = new double[3][3][nb];
      double[] xg = new double[nb];
      double[] yg = new double[nb];
      double[] zg = new double[nb];
      byte[] bord = new byte[nb];
      //       		double[] a = new double[nb];
      //       		double[] b = new double[nb];
      //       		double[] c = new double[nb];
      //       		double[] Fab = new double[nb];
      //       		double[] Fac = new double[nb];
      //       		double[] Fbc = new double[nb];
      //       		double[] sp = new double[nb];
      double[][] lmin = new double[nb][3];
      double[][] lmax = new double[nb][3];
      IJ.showStatus("Measure surfaces ...");
      calculmarchsurfstack(stack, nb, surface, volume_m);
      calculmarchsurfstacknb(stack, nb, surfacenb);
      // calculvolumestack(stack,nb,volume_p);
      IJ.showStatus("Measure volumes and inertia ...");
      calculcgstack(stack, nb, volume_p, xg, yg, zg);
      calculinertiestack(stack, nb, xg, yg, zg, I);
      inertie(nb, I, J, dir);
      IJ.showStatus("Measure bounding boxes ...");
      boitestack(stack, nb, xg, yg, zg, dir, lmin, lmax);
      borderstack(stack, nb, bord);
      IJ.showStatus("Save results ...");
      sauvegarde(
          volume_p, volume_m, surface, surfacenb, xg, yg, zg, J, dir, nb, bord, lmin, lmax,
          directory, name);
      volume_m = null;
      volume_p = null;
      surface = null;
      xg = null;
      yg = null;
      zg = null;
    }
  }
예제 #2
0
  public void run(String arg) {
    if (IJ.versionLessThan("1.49d")) return;

    if (!showDialog()) return;

    SaveDialog sd = new SaveDialog("Save as Bricks...", "", "");
    basename = sd.getFileName();
    directory = sd.getDirectory();
    if (basename == null || directory == null) return;

    build_bricks();
  }
예제 #3
0
 public static void showDialog(Frame parent) {
   SaveDialog dialog = new SaveDialog(parent);
   dialog.pack();
   dialog.setLocationRelativeTo(parent);
   dialog.setVisible(true);
   /*
    * closed
    */
   if (dialog.close) {
     RefluxEdit.getInstance().close();
   }
 }
 public boolean install(String path) {
   boolean isURL = path.contains("://");
   String lcPath = path.toLowerCase();
   if (isURL) path = Opener.updateUrl(path);
   boolean isTool =
       lcPath.endsWith("tool.ijm")
           || lcPath.endsWith("tool.txt")
           || lcPath.endsWith("tool.class")
           || lcPath.endsWith("tool.jar");
   boolean isMacro = lcPath.endsWith(".txt") || lcPath.endsWith(".ijm");
   byte[] data = null;
   String name = path;
   if (isURL) {
     int index = path.lastIndexOf("/");
     if (index != -1 && index <= path.length() - 1) name = path.substring(index + 1);
     data = download(path, name);
   } else {
     File f = new File(path);
     name = f.getName();
     data = download(f);
   }
   if (data == null) return false;
   if (name.endsWith(".txt") && !name.contains("_"))
     name = name.substring(0, name.length() - 4) + ".ijm";
   if (name.endsWith(".zip")) {
     if (!name.contains("_")) {
       IJ.error("Plugin Installer", "No underscore in file name:\n \n  " + name);
       return false;
     }
     name = name.substring(0, name.length() - 4) + ".jar";
   }
   String dir = null;
   boolean isLibrary = name.endsWith(".jar") && !name.contains("_");
   if (isLibrary) {
     dir = Menus.getPlugInsPath() + "jars";
     File f = new File(dir);
     if (!f.exists()) {
       boolean ok = f.mkdir();
       if (!ok) dir = Menus.getPlugInsPath();
     }
   }
   if (isTool) {
     dir = Menus.getPlugInsPath() + "Tools" + File.separator;
     File f = new File(dir);
     if (!f.exists()) {
       boolean ok = f.mkdir();
       if (!ok) dir = null;
     }
     if (dir != null && isMacro) {
       String name2 = getToolName(data);
       if (name2 != null) name = name2;
     }
   }
   if (dir == null) {
     SaveDialog sd =
         new SaveDialog("Save Plugin, Macro or Script...", Menus.getPlugInsPath(), name, null);
     String name2 = sd.getFileName();
     if (name2 == null) return false;
     dir = sd.getDirectory();
   }
   // IJ.log(dir+"   "+Menus.getPlugInsPath());
   if (!savePlugin(new File(dir, name), data)) return false;
   if (name.endsWith(".java")) IJ.runPlugIn("ij.plugin.Compiler", dir + name);
   Menus.updateImageJMenus();
   if (isTool) {
     if (isMacro) IJ.runPlugIn("ij.plugin.Macro_Runner", "Tools/" + name);
     else if (name.endsWith(".class")) {
       name = name.replaceAll("_", " ");
       name = name.substring(0, name.length() - 6);
       IJ.run(name);
     }
   }
   return true;
 }