@Override
protected void setChart() {
SeriesManager<Double, Double> sf = new SeriesManager<Double, Double>(intermediateData);
List<DataSeries<Double, Double>> seriesList = sf.getSeries();
DataSeries<Double, Double> series = seriesList.get(0);
List<SeriesPair<Double, Double>> values = series.getSeriesValues(Double.class, Double.class);
XYSeries deltaMassSeries = new XYSeries(series.getIdentifier());
for (SeriesPair<Double, Double> value : values) {
deltaMassSeries.add(value.getX(), value.getY());
}
XYSeriesCollection dataset = new XYSeriesCollection();
dataset.addSeries(deltaMassSeries);
chart =
ChartFactory.createXYLineChart(
getChartTitle(), // chart title
"Experimental m/z - Theoretical m/z", // x axis label
"Relative Frequency", // y axis label
dataset, // chartData
PlotOrientation.VERTICAL,
false, // include legend
true, // tooltips
false // urls
);
chart.addSubtitle(new TextTitle(getChartSubTitle()));
XYPlot plot = chart.getXYPlot();
plot.setDomainZeroBaselineVisible(true);
plot.setBackgroundAlpha(0f);
plot.setDomainGridlinePaint(Color.red);
plot.setRangeGridlinePaint(Color.blue);
}
protected void doGet(HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
try {
// From AxisChartServlet.java:init()
LegendProperties legendProperties = new LegendProperties();
ChartProperties chartProperties = new ChartProperties();
AxisProperties axisProperties = new AxisProperties(false);
ChartFont axisScaleFont =
new ChartFont(new Font("Georgia Negreta cursiva", Font.PLAIN, 13), Color.black);
axisProperties.getXAxisProperties().setScaleChartFont(axisScaleFont);
axisProperties.getYAxisProperties().setScaleChartFont(axisScaleFont);
ChartFont axisTitleFont =
new ChartFont(new Font("Arial Narrow", Font.PLAIN, 14), Color.black);
axisProperties.getXAxisProperties().setTitleChartFont(axisTitleFont);
axisProperties.getYAxisProperties().setTitleChartFont(axisTitleFont);
Stroke[] strokes = {
LineChartProperties.DEFAULT_LINE_STROKE,
LineChartProperties.DEFAULT_LINE_STROKE,
LineChartProperties.DEFAULT_LINE_STROKE
};
Shape[] shapes = {
PointChartProperties.SHAPE_TRIANGLE,
PointChartProperties.SHAPE_DIAMOND,
PointChartProperties.SHAPE_CIRCLE
};
LineChartProperties lineChartProperties = new LineChartProperties(strokes, shapes);
String[] xAxisLabels = {"1998", "1999", "2000", "2001", "2002", "2003", "2004"};
String xAxisTitle = "Years";
String yAxisTitle = "Problems";
String title = "Micro$oft At Work";
DataSeries dataSeries = new DataSeries(xAxisLabels, xAxisTitle, yAxisTitle, title);
// From AxisChartServlet.java:createAxisChartDataSet
double[][] data = TestDataGenerator.getRandomNumbers(3, 7, 200, 500);
String[] legendLabels = {"Bugs", "Security Holes", "Backdoors"};
Paint[] paints = TestDataGenerator.getRandomPaints(3);
AxisChartDataSet acds =
new AxisChartDataSet(data, legendLabels, paints, ChartType.LINE, lineChartProperties);
dataSeries.addIAxisPlotDataSet(acds);
AxisChart axisChart =
new AxisChart(dataSeries, chartProperties, axisProperties, legendProperties, 550, 360);
ServletEncoderHelper.encodeJPEG13(axisChart, 1.0f, response);
} catch (Exception e) {
System.out.println(e);
}
}
// @Override
public boolean isSeriesEmpty(DataSeriesType type) {
SeriesManager<Integer, Integer> sf = new SeriesManager<Integer, Integer>(intermediateData);
List<DataSeries<Integer, Integer>> seriesList = sf.getSeries();
// Adds the 'All Spectra' series at the end in the local variable 'seriesList'
// **NOTE** The intermediateData is NOT modified
seriesList.add(getAllSpectraSeries(seriesList));
for (DataSeries<Integer, Integer> series : seriesList) {
if (series.getType() == type) return series.isEmpty(Integer.class, Integer.class);
}
return true;
}
private DataSeries<Integer, Integer> getAllSpectraSeries(
List<DataSeries<Integer, Integer>> seriesList) {
List<Integer> keys = new ArrayList<Integer>();
Map<Integer, Integer> map = new HashMap<Integer, Integer>();
for (DataSeries<Integer, Integer> series : seriesList) {
for (SeriesPair<Integer, Integer> sp : series.getSeriesValues(Integer.class, Integer.class)) {
Integer key = sp.getX();
Integer value = map.containsKey(key) ? map.get(key) + sp.getY() : sp.getY();
if (!keys.contains(key)) keys.add(key);
map.put(key, value);
}
}
List<SeriesPair<Integer, Integer>> seriesPairs = new ArrayList<SeriesPair<Integer, Integer>>();
for (Integer key : keys) {
Integer value = map.get(key);
SeriesPair<Integer, Integer> seriesPair = new SeriesPair<Integer, Integer>(key, value);
seriesPairs.add(seriesPair);
}
return new DataSeries<Integer, Integer>(
DataSeriesType.ALL_SPECTRA, DataSeriesType.ALL_SPECTRA.getType(), seriesPairs);
}
@Override
protected void setChart() {
SeriesManager<Integer, Integer> sf = new SeriesManager<Integer, Integer>(intermediateData);
List<DataSeries<Integer, Integer>> seriesList = sf.getSeries();
// Adds the 'All Spectra' series at the end in the local variable 'seriesList'
// **NOTE** The intermediateData is NOT modified
seriesList.add(getAllSpectraSeries(seriesList));
List<Color> seriesColor = new ArrayList<Color>();
DefaultCategoryDataset dataset = new DefaultCategoryDataset();
for (DataSeries<Integer, Integer> series : seriesList) {
DataSeriesType seriesType = series.getType();
if (!visibleTypes.contains(seriesType)) continue;
String serieKey = series.getIdentifier();
List<SeriesPair<Integer, Integer>> values =
series.getSeriesValues(Integer.class, Integer.class);
Map<String, Integer> map = new HashMap<String, Integer>();
// The map is filled with the intermediate data values
int greaterThanTopValue = 0;
for (SeriesPair<Integer, Integer> value : values) {
int xValue = value.getX();
int yValue = value.getY();
if (xValue > TOP_VALUE) {
greaterThanTopValue += yValue;
} else {
map.put("" + xValue, yValue);
}
}
// Finally the JFreeChart data object is created and filled with the processed data
// DefaultKeyedValues data = new DefaultKeyedValues();
for (int i = 1; i <= TOP_VALUE; i++) {
String category = "" + i;
int value = map.containsKey(category) ? map.get(category) : 0;
dataset.addValue(value, serieKey, category);
}
dataset.addValue(greaterThanTopValue, serieKey, GT_TOP_VALUE_KEY);
seriesColor.add(seriesType.getColor());
}
chart =
ChartFactory.createBarChart(
getChartTitle(), // chart title
"Precursor Ion Charge", // x axis label
"Frequency", // y axis label
dataset, // chartData
PlotOrientation.VERTICAL,
true, // include legend
true, // tooltips
false // urls
);
chart.addSubtitle(new TextTitle());
CategoryPlot plot = (CategoryPlot) chart.getPlot();
BarRenderer renderer = (BarRenderer) plot.getRenderer();
renderer.setBaseItemLabelGenerator(new NumberLegendGenerator());
for (int i = 0; i < dataset.getRowCount(); i++) {
renderer.setSeriesItemLabelsVisible(i, Boolean.TRUE);
renderer.setSeriesPaint(i, seriesColor.get(i));
}
plot.getRangeAxis().setUpperMargin(CHART_UPPER_MARGIN);
plot.setBackgroundAlpha(0f);
plot.setDomainGridlinePaint(Color.red);
plot.setRangeGridlinePaint(Color.blue);
renderer.setShadowVisible(false);
renderer.setDrawBarOutline(false);
renderer.setItemMargin(0);
}
public void update(MultihopMsg msg) {
String info;
SurgeMsg SMsg = new SurgeMsg(msg.dataGet(), msg.offset_data(0));
if (SMsg.get_type() == 0) {
if (SMsg.get_parentaddr() == MainFrame.BEACON_BASE_ADDRESS) {
isDirectChild = true;
} else {
isDirectChild = false;
}
// Update message count and rate
// Only update if this message is coming to the root from
// a direct child
int saddr = msg.get_sourceaddr();
NodeInfo ni = (NodeInfo) SensorAnalyzer.proprietaryNodeInfo.get(new Integer(saddr));
if (ni != null) {
if (ni.isDirectChild) {
msgCount++;
int new_seq_no = (int) SMsg.get_seq_no() & 0x7fffff;
if (stats_start_sequence_number == 0) stats_start_sequence_number = new_seq_no;
if (seq_no == 0) seq_no = new_seq_no - 1;
int diff = new_seq_no - seq_no;
if (diff > 1000) diff = 1;
active = true;
long curtime = System.currentTimeMillis();
packetTimes[packetTimesPointer++] = curtime - lastTime;
packetTimesPointer %= SensorAnalyzer.HISTORY_LENGTH;
packetSkips[packetSkipsPointer++] = diff;
packetSkipsPointer %= SensorAnalyzer.HISTORY_LENGTH;
msgRate = calcMsgRate(0);
msgYield = calcMsgYield(0);
SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy hh:mm:ss a");
String log = "";
log += nodeNumber + "#";
log += msgCount + "#";
log += formatter.format(new Date()) + "#";
log += curtime + "#";
log += (curtime - lastTime) + "#";
log += SMsg.get_parentaddr() + "#";
parent_count[SMsg.get_parentaddr()]++;
log += msgRate + "#";
seq_no = new_seq_no;
batt = (int) SMsg.get_seq_no() >> 23 & 0x1ff;
log += seq_no + "#";
log += hopcount + "#";
level_sum += hopcount;
log += SMsg.get_reading() + "#";
log += batt + "#";
for (int i = 0; i < 5; i++) {
log += neighbors[i].id + "#";
log += neighbors[i].hopcount + "#";
log += neighbors[i].link_quality / 255.0 + "#";
}
log += SMsg.get_temp() + "#";
log += SMsg.get_light() + "#";
log += SMsg.get_accelx() + "#";
log += SMsg.get_accely() + "#";
log += SMsg.get_magx() + "#";
log += SMsg.get_magy() + "#";
System.out.println(log);
double batt_val = (double) batt;
batt_val = 1.25 * 1023.0 / batt_val;
batt_val *= 256.0 / 4.0;
// System.out.println(batt_val);
// Store the sensor readings.
yield_series.insertNewReading(total_yield++, new Integer((int) (yield() * 256.0)));
time_series.insertNewReading(seq_no, new Long(curtime));
batt_series.insertNewReading(seq_no, new Integer((int) batt_val));
temp_series.insertNewReading(seq_no, new Integer(SMsg.get_temp()));
light_series.insertNewReading(seq_no, new Integer(SMsg.get_light()));
accelx_series.insertNewReading(seq_no, new Integer(SMsg.get_accelx()));
accely_series.insertNewReading(seq_no, new Integer(SMsg.get_accely()));
magx_series.insertNewReading(seq_no, new Integer(SMsg.get_magx()));
magy_series.insertNewReading(seq_no, new Integer(SMsg.get_magy()));
link_quality = neighbors[0].link_quality / 255;
// update the edge quality as well...
MainClass.locationAnalyzer.setQualityForEdge(
nodeNumber.intValue(), SMsg.get_parentaddr(), (int) (link_quality * 255.0));
lastTime = curtime;
}
}
if (self_calc != false) info = msgCount + " msgs ";
else info = "";
this.value = SMsg.get_reading();
if (panel != null) {
panel.YieldLabel.setText(String.valueOf(percent_yield()) + " %");
panel.SensorLabel.setText(String.valueOf(value));
panel.ParentLabel.setText(String.valueOf(SMsg.get_parentaddr()));
panel.SequenceLabel.setText(String.valueOf(seq_no));
panel.CountLabel.setText(String.valueOf(msgCount));
panel.DepthLabel.setText(String.valueOf(hopcount));
panel.repaint();
}
this.infoString = info;
}
}