private void spawnRandomers() {
for (int i = 0; i < randomN; i++) {
float x = (float) Math.random() * width;
float y = (float) Math.random() * height;
float r =
(float)
Math.sqrt(
Math.pow(((Player) players.get(0)).getX() - x, 2)
+ Math.pow(((Player) players.get(0)).getY() - x, 2));
while (r < distanceLimit) {
x = (float) Math.random() * width;
y = (float) Math.random() * height;
r =
(float)
Math.sqrt(
Math.pow(((Player) players.get(0)).getX() - x, 2)
+ Math.pow(((Player) players.get(0)).getY() - y, 2));
}
enemies.add(new EnemyTypes.Random(x, y, 0.5f, borders));
}
spawnRandomersB = false;
}
/* Creates a spline fitted polygon with one pixel segment lengths
that can be retrieved using the getFloatPolygon() method. */
public void fitSplineForStraightening() {
fitSpline((int) getUncalibratedLength() * 2);
if (splinePoints == 0) return;
float[] xpoints = new float[splinePoints * 2];
float[] ypoints = new float[splinePoints * 2];
xpoints[0] = xSpline[0];
ypoints[0] = ySpline[0];
int n = 1, n2;
double inc = 0.01;
double distance = 0.0, distance2 = 0.0, dx = 0.0, dy = 0.0, xinc, yinc;
double x, y, lastx, lasty, x1, y1, x2 = xSpline[0], y2 = ySpline[0];
for (int i = 1; i < splinePoints; i++) {
x1 = x2;
y1 = y2;
x = x1;
y = y1;
x2 = xSpline[i];
y2 = ySpline[i];
dx = x2 - x1;
dy = y2 - y1;
distance = Math.sqrt(dx * dx + dy * dy);
xinc = dx * inc / distance;
yinc = dy * inc / distance;
lastx = xpoints[n - 1];
lasty = ypoints[n - 1];
// n2 = (int)(dx/xinc);
n2 = (int) (distance / inc);
if (splinePoints == 2) n2++;
do {
dx = x - lastx;
dy = y - lasty;
distance2 = Math.sqrt(dx * dx + dy * dy);
// IJ.log(i+" "+IJ.d2s(xinc,5)+" "+IJ.d2s(yinc,5)+" "+IJ.d2s(distance,2)+"
// "+IJ.d2s(distance2,2)+" "+IJ.d2s(x,2)+" "+IJ.d2s(y,2)+" "+IJ.d2s(lastx,2)+"
// "+IJ.d2s(lasty,2)+" "+n+" "+n2);
if (distance2 >= 1.0 - inc / 2.0 && n < xpoints.length - 1) {
xpoints[n] = (float) x;
ypoints[n] = (float) y;
// IJ.log("--- "+IJ.d2s(x,2)+" "+IJ.d2s(y,2)+" "+n);
n++;
lastx = x;
lasty = y;
}
x += xinc;
y += yinc;
} while (--n2 > 0);
}
xSpline = xpoints;
ySpline = ypoints;
splinePoints = n;
}
static { // data[] is a bitmap image of the ball of radius R
data = new byte[R * 2 * R * 2];
for (int Y = -R; Y < R; Y++) {
int x0 = (int) (Math.sqrt(R * R - Y * Y) + 0.5);
for (int X = -x0; X < x0; X++) {
// sqrt(x^2 + y^2) gives distance from the spot light
int x = X + hx, y = Y + hy;
int r = (int) (Math.sqrt(x * x + y * y) + 0.5);
// set the maximal intensity to the maximal distance
// (in pixels) from the spot light
if (r > maxr) maxr = r;
data[(Y + R) * (R * 2) + (X + R)] = (r <= 0) ? 1 : (byte) r;
}
}
}
// For now the final output is unusable. The associated quantization step
// needs some tweaking. If you get this part working, please let me know.
public double[][] forwardDCTExtreme(float[][] input) {
double[][] output = new double[N][N];
double tmp0;
double tmp1;
double tmp2;
double tmp3;
double tmp4;
double tmp5;
double tmp6;
double tmp7;
double tmp10;
double tmp11;
double tmp12;
double tmp13;
double z1;
double z2;
double z3;
double z4;
double z5;
double z11;
double z13;
int i;
int j;
int v;
int u;
int x;
int y;
for (v = 0; v < 8; v++) {
for (u = 0; u < 8; u++) {
for (x = 0; x < 8; x++) {
for (y = 0; y < 8; y++) {
output[v][u] +=
(((double) input[x][y])
* Math.cos(((double) ((2 * x) + 1) * (double) u * Math.PI) / (double) 16)
* Math.cos(((double) ((2 * y) + 1) * (double) v * Math.PI) / (double) 16));
}
}
output[v][u] *=
((double) (0.25)
* ((u == 0) ? ((double) 1.0 / Math.sqrt(2)) : (double) 1.0)
* ((v == 0) ? ((double) 1.0 / Math.sqrt(2)) : (double) 1.0));
}
}
return output;
}
public void calcDimsAndStartPts(LinkedList llist, draw d) {
/* Determines the following variables Lenx, Leny, Startx, Starty,
TitleStarty */
// Task: Calculate the length and height of a node and its starting point.
// It also computes the y-coordinate of the title
double TitleToSSGap, MinGt, MaxGt, Diam, MinTitlex, MaxTitlex;
int NumNodes, NumLines;
super.calcDimsAndStartPts(llist, d);
// With circular nodes, not adding Textheight works better to finetune the circle size
Lenx = Maxstringlength - .02;
Leny = ((linespernode + 1) * Textheight) + ((linespernode - 1) * (0.5 * Textheight));
TDx = (Lenx + Leny) / 5.0; // Height is a third of their average *)
TDy = TDx / Math.sqrt(3);
TitleToSSGap = 2 * Titleheight;
NumLines = title.size();
Startx = 0.0;
Starty =
Topy
- IconHeight
- IconToTitleGap
- (NumLines * Titleheight)
- ((NumLines - 1) * (0.5 * Titleheight))
- TitleToSSGap
- (Lenx / 2.0)
- .15;
TitleStarty = (Topy - IconHeight - IconToTitleGap - Titleheight) + .05;
}
public static WritableRaster glowmask(Raster img) {
Coord sz = imgsz(img);
int nb = img.getNumBands();
WritableRaster ret = alpharaster(sz);
float[] hsv = new float[3];
float max = 0;
for (int y = 0; y < sz.y; y++) {
for (int x = 0; x < sz.x; x++) {
Color.RGBtoHSB(img.getSample(x, y, 0), img.getSample(x, y, 1), img.getSample(x, y, 2), hsv);
float a = (nb > 3) ? (img.getSample(x, y, 3) / 255f) : 1f;
float val = ((1f - hsv[1]) * hsv[2]) * a;
max = Math.max(max, val);
}
}
float imax = 1f / max;
for (int y = 0; y < sz.y; y++) {
for (int x = 0; x < sz.x; x++) {
Color.RGBtoHSB(img.getSample(x, y, 0), img.getSample(x, y, 1), img.getSample(x, y, 2), hsv);
float a = (nb > 3) ? (img.getSample(x, y, 3) / 255f) : 1f;
float val = ((1f - hsv[1]) * hsv[2]) * a;
ret.setSample(x, y, 0, Math.min(Math.max((int) (Math.sqrt(val * imax) * 255), 0), 255));
}
}
return (ret);
}
/**
* Returns the perimeter length of ROIs created using the wand tool and the particle analyzer. The
* algorithm counts edge pixels as 1 and corner pixels as sqrt(2). It does this by calculating the
* total length of the ROI boundary and subtracting 2-sqrt(2) for each non-adjacent corner. For
* example, a 1x1 pixel ROI has a boundary length of 4 and 2 non-adjacent edges so the perimeter
* is 4-2*(2-sqrt(2)). A 2x2 pixel ROI has a boundary length of 8 and 4 non-adjacent edges so the
* perimeter is 8-4*(2-sqrt(2)).
*/
double getTracedPerimeter() {
int sumdx = 0;
int sumdy = 0;
int nCorners = 0;
int dx1 = xp[0] - xp[nPoints - 1];
int dy1 = yp[0] - yp[nPoints - 1];
int side1 = Math.abs(dx1) + Math.abs(dy1); // one of these is 0
boolean corner = false;
int nexti, dx2, dy2, side2;
for (int i = 0; i < nPoints; i++) {
nexti = i + 1;
if (nexti == nPoints) nexti = 0;
dx2 = xp[nexti] - xp[i];
dy2 = yp[nexti] - yp[i];
sumdx += Math.abs(dx1);
sumdy += Math.abs(dy1);
side2 = Math.abs(dx2) + Math.abs(dy2);
if (side1 > 1 || !corner) {
corner = true;
nCorners++;
} else corner = false;
dx1 = dx2;
dy1 = dy2;
side1 = side2;
}
double w = 1.0, h = 1.0;
if (imp != null) {
Calibration cal = imp.getCalibration();
w = cal.pixelWidth;
h = cal.pixelHeight;
}
return sumdx * w + sumdy * h - (nCorners * ((w + h) - Math.sqrt(w * w + h * h)));
}
/**
* Find the distance between two characters
*
* @param Targ Target character
* @return distance
*/
public double Dist(GameObject Targ) {
// find x squared and y squared
double dx =
Math.pow(((X + W / 2 * GROWTHFACTOR) - (Targ.X + Targ.W / 2 * Targ.GROWTHFACTOR)), 2);
double dy =
Math.pow(((Y + H / 2 * GROWTHFACTOR) - (Targ.Y + Targ.H / 2 * Targ.GROWTHFACTOR)), 2);
// find distance
return (Math.sqrt(dx + dy));
}
void handleMouseMove(int sx, int sy) {
// Do rubber banding
int tool = Toolbar.getToolId();
if (!(tool == Toolbar.POLYGON || tool == Toolbar.POLYLINE || tool == Toolbar.ANGLE)) {
imp.deleteRoi();
imp.draw();
return;
}
drawRubberBand(sx, sy);
degrees = Double.NaN;
double len = -1;
if (nPoints > 1) {
double x1, y1, x2, y2;
if (xpf != null) {
x1 = xpf[nPoints - 2];
y1 = ypf[nPoints - 2];
x2 = xpf[nPoints - 1];
y2 = ypf[nPoints - 1];
} else {
x1 = xp[nPoints - 2];
y1 = yp[nPoints - 2];
x2 = xp[nPoints - 1];
y2 = yp[nPoints - 1];
}
degrees =
getAngle(
(int) Math.round(x1),
(int) Math.round(y1),
(int) Math.round(x2),
(int) Math.round(y2));
if (tool != Toolbar.ANGLE) {
Calibration cal = imp.getCalibration();
double pw = cal.pixelWidth, ph = cal.pixelHeight;
if (IJ.altKeyDown()) {
pw = 1.0;
ph = 1.0;
}
len = Math.sqrt((x2 - x1) * pw * (x2 - x1) * pw + (y2 - y1) * ph * (y2 - y1) * ph);
}
}
if (tool == Toolbar.ANGLE) {
if (nPoints == 2) angle1 = degrees;
else if (nPoints == 3) {
double angle2 = getAngle(xp[1], yp[1], xp[2], yp[2]);
degrees = Math.abs(180 - Math.abs(angle1 - angle2));
if (degrees > 180.0) degrees = 360.0 - degrees;
}
}
String length = len != -1 ? ", length=" + IJ.d2s(len) : "";
double degrees2 =
tool == Toolbar.ANGLE && nPoints == 3 && Prefs.reflexAngle ? 360.0 - degrees : degrees;
String angle = !Double.isNaN(degrees) ? ", angle=" + IJ.d2s(degrees2) : "";
int ox = ic != null ? ic.offScreenX(sx) : sx;
int oy = ic != null ? ic.offScreenY(sy) : sy;
IJ.showStatus(imp.getLocationAsString(ox, oy) + length + angle);
}
static BufferedImage addMagnitudes(BufferedImage img1, BufferedImage img2) {
BufferedImage dst = new BufferedImage(img1.getWidth(), img1.getHeight(), img1.getType());
for (int y = 0; y < img1.getHeight(); ++y) {
for (int x = 0; x < img1.getWidth(); ++x) {
int rgb1 = img1.getRGB(x, y);
int rgb2 = img2.getRGB(x, y);
int r1 = (rgb1 & 0x00FF0000) >> 16;
int r2 = (rgb2 & 0x00FF0000) >> 16;
int r = (int) (Math.sqrt(r1 * r1 + r2 * r2) / Math.sqrt(2.0));
if (r > 255) r = 255;
if (r < 0) r = 0;
int g1 = (rgb1 & 0x0000FF00) >> 8;
int g2 = (rgb2 & 0x0000FF00) >> 8;
int g = (int) (Math.sqrt(g1 * g1 + g2 * g2) / Math.sqrt(2.0));
if (g > 255) g = 255;
if (g < 0) g = 0;
int b1 = rgb1 & 0x000000FF;
int b2 = rgb2 & 0x000000FF;
int b = (int) (Math.sqrt(b1 * b1 + b2 * b2) / Math.sqrt(2.0));
if (b > 255) b = 255;
if (b < 0) b = 0;
int rgb = b + (g << 8) + (r << 16);
dst.setRGB(x, y, rgb);
}
}
return dst;
}
double getFloatSmoothedPerimeter() {
double length = getSmoothedLineLength();
double w2 = 1.0, h2 = 1.0;
if (imp != null) {
Calibration cal = imp.getCalibration();
w2 = cal.pixelWidth * cal.pixelWidth;
h2 = cal.pixelHeight * cal.pixelHeight;
}
double dx = xpf[nPoints - 1] - xpf[0];
double dy = ypf[nPoints - 1] - ypf[0];
length += Math.sqrt(dx * dx * w2 + dy * dy * h2);
return length;
}
double getFloatSmoothedLineLength() {
double length = 0.0;
double w2 = 1.0;
double h2 = 1.0;
double dx, dy;
if (imp != null) {
Calibration cal = imp.getCalibration();
w2 = cal.pixelWidth * cal.pixelWidth;
h2 = cal.pixelHeight * cal.pixelHeight;
}
dx = (xpf[0] + xpf[1] + xpf[2]) / 3.0 - xpf[0];
dy = (ypf[0] + ypf[1] + ypf[2]) / 3.0 - ypf[0];
length += Math.sqrt(dx * dx * w2 + dy * dy * h2);
for (int i = 1; i < nPoints - 2; i++) {
dx = (xpf[i + 2] - xpf[i - 1]) / 3.0;
dy = (ypf[i + 2] - ypf[i - 1]) / 3.0;
length += Math.sqrt(dx * dx * w2 + dy * dy * h2);
}
dx = xpf[nPoints - 1] - (xpf[nPoints - 3] + xpf[nPoints - 2] + xpf[nPoints - 1]) / 3.0;
dy = ypf[nPoints - 1] - (ypf[nPoints - 3] + ypf[nPoints - 2] + ypf[nPoints - 1]) / 3.0;
length += Math.sqrt(dx * dx * w2 + dy * dy * h2);
return length;
}
public void mousePressed(MouseEvent e) {
requestFocus();
Point p = e.getPoint();
int size =
Math.min(
MAX_SIZE,
Math.min(
getWidth() - imagePadding.left - imagePadding.right,
getHeight() - imagePadding.top - imagePadding.bottom));
p.translate(-(getWidth() / 2 - size / 2), -(getHeight() / 2 - size / 2));
if (mode == ColorPicker.BRI || mode == ColorPicker.SAT) {
// the two circular views:
double radius = ((double) size) / 2.0;
double x = p.getX() - size / 2.0;
double y = p.getY() - size / 2.0;
double r = Math.sqrt(x * x + y * y) / radius;
double theta = Math.atan2(y, x) / (Math.PI * 2.0);
if (r > 1) r = 1;
if (mode == ColorPicker.BRI) {
setHSB((float) (theta + .25f), (float) (r), bri);
} else {
setHSB((float) (theta + .25f), sat, (float) (r));
}
} else if (mode == ColorPicker.HUE) {
float s = ((float) p.x) / ((float) size);
float b = ((float) p.y) / ((float) size);
if (s < 0) s = 0;
if (s > 1) s = 1;
if (b < 0) b = 0;
if (b > 1) b = 1;
setHSB(hue, s, b);
} else {
int x2 = p.x * 255 / size;
int y2 = p.y * 255 / size;
if (x2 < 0) x2 = 0;
if (x2 > 255) x2 = 255;
if (y2 < 0) y2 = 0;
if (y2 > 255) y2 = 255;
if (mode == ColorPicker.RED) {
setRGB(red, x2, y2);
} else if (mode == ColorPicker.GREEN) {
setRGB(x2, green, y2);
} else {
setRGB(x2, y2, blue);
}
}
}
protected void transformInverse(int x, int y, float[] out) {
float dx = x - icentreX;
float dy = y - icentreY;
float distance = dx * dx + dy * dy;
if (distance > radius2) {
out[0] = x;
out[1] = y;
} else {
distance = (float) Math.sqrt(distance);
float a = (float) Math.atan2(dy, dx) + angle * (radius - distance) / radius;
out[0] = icentreX + distance * (float) Math.cos(a);
out[1] = icentreY + distance * (float) Math.sin(a);
}
}
/** Returns the perimeter (for ROIs) or length (for lines). */
public double getLength() {
if (type == TRACED_ROI) return getTracedPerimeter();
if (nPoints > 2) {
if (type == FREEROI) return getSmoothedPerimeter();
else if (type == FREELINE && !(width == 0 || height == 0)) return getSmoothedLineLength();
}
double length = 0.0;
int dx, dy;
double w2 = 1.0, h2 = 1.0;
if (imp != null) {
Calibration cal = imp.getCalibration();
w2 = cal.pixelWidth * cal.pixelWidth;
h2 = cal.pixelHeight * cal.pixelHeight;
}
if (xSpline != null) {
double fdx, fdy;
for (int i = 0; i < (splinePoints - 1); i++) {
fdx = xSpline[i + 1] - xSpline[i];
fdy = ySpline[i + 1] - ySpline[i];
length += Math.sqrt(fdx * fdx * w2 + fdy * fdy * h2);
}
if (type == POLYGON) {
fdx = xSpline[0] - xSpline[splinePoints - 1];
fdy = ySpline[0] - ySpline[splinePoints - 1];
length += Math.sqrt(fdx * fdx * w2 + fdy * fdy * h2);
}
} else if (xpf != null) {
double fdx, fdy;
for (int i = 0; i < (nPoints - 1); i++) {
fdx = xpf[i + 1] - xpf[i];
fdy = ypf[i + 1] - ypf[i];
length += Math.sqrt(fdx * fdx * w2 + fdy * fdy * h2);
}
if (type == POLYGON) {
fdx = xpf[0] - xpf[nPoints - 1];
fdy = ypf[0] - ypf[nPoints - 1];
length += Math.sqrt(fdx * fdx * w2 + fdy * fdy * h2);
}
} else {
for (int i = 0; i < (nPoints - 1); i++) {
dx = xp[i + 1] - xp[i];
dy = yp[i + 1] - yp[i];
length += Math.sqrt(dx * dx * w2 + dy * dy * h2);
}
if (type == POLYGON) {
dx = xp[0] - xp[nPoints - 1];
dy = yp[0] - yp[nPoints - 1];
length += Math.sqrt(dx * dx * w2 + dy * dy * h2);
}
}
return length;
}
/**
* 指定した属性でJDGradientPaintを構築します.
*
* @param p1 ユーザー空間で最初に指定されたPoint<br>
* p2 ユーザー空間で2番目に指定されたPoint<br>
* ; c1 ポイントp1のカラー<br>
* c2 ポイントp2のカラー<br>
* cp p1からp2間の制御点 cols 制御点のカラー gTyp 塗りのタイプ
*/
public JDGradientPaint(
Point2D p1, Point2D p2, Color c1, Color c2, float[] cp, Color[] cols, int gType) {
this.p1 = p1;
this.p2 = p2;
this.c1 = c1;
this.c2 = c2;
this.controlPoints = cp;
this.colors = cols;
this.gType = gType;
dx = (float) (p2.getX() - p1.getX());
dy = (float) (p2.getY() - p1.getY());
distance = (float) Math.sqrt(dx * dx + dy * dy);
startC = new float[4];
endC = new float[4];
startC = c1.getComponents(startC);
endC = c2.getComponents(endC);
}
public void vec2FieldMagnitude(Field field, AffineTransform ftoi) {
AffineTransform itof = null;
try {
itof = ftoi.createInverse();
} catch (NoninvertibleTransformException niv) {
TDebug.println(0, "NoninvertibleTransformException: " + niv);
}
Vector3d v = new Vector3d();
Point2D.Double p = new Point2D.Double();
for (int j = 0, k = 0; j < height; ++j)
for (int i = 0; i < width; ++i, ++k) {
p.x = i;
p.y = j;
itof.transform(p, p);
v = field.get(p.x, p.y, 0.0);
f[k] = (float) Math.sqrt(v.x * v.x + v.y * v.y);
}
}
/**
* Make a Gaussian blur kernel.
*
* @param radius the blur radius
* @return the kernel
*/
public static Kernel makeKernel(float radius) {
int r = (int) Math.ceil(radius);
int rows = r * 2 + 1;
float[] matrix = new float[rows];
float sigma = radius / 3;
float sigma22 = 2 * sigma * sigma;
float sigmaPi2 = 2 * ImageMath.PI * sigma;
float sqrtSigmaPi2 = (float) Math.sqrt(sigmaPi2);
float radius2 = radius * radius;
float total = 0;
int index = 0;
for (int row = -r; row <= r; row++) {
float distance = row * row;
if (distance > radius2) matrix[index] = 0;
else matrix[index] = (float) Math.exp(-(distance) / sigma22) / sqrtSigmaPi2;
total += matrix[index];
index++;
}
for (int i = 0; i < rows; i++) matrix[i] /= total;
return new Kernel(rows, 1, matrix);
}
protected void transformInverse(int x, int y, float[] out) {
float theta, t;
float m, xmax, ymax;
float r = 0;
switch (type) {
case RECT_TO_POLAR:
theta = 0;
if (x >= centreX) {
if (y > centreY) {
theta =
ImageMath.PI - (float) Math.atan(((float) (x - centreX)) / ((float) (y - centreY)));
r = (float) Math.sqrt(sqr(x - centreX) + sqr(y - centreY));
} else if (y < centreY) {
theta = (float) Math.atan(((float) (x - centreX)) / ((float) (centreY - y)));
r = (float) Math.sqrt(sqr(x - centreX) + sqr(centreY - y));
} else {
theta = ImageMath.HALF_PI;
r = x - centreX;
}
} else if (x < centreX) {
if (y < centreY) {
theta =
ImageMath.TWO_PI
- (float) Math.atan(((float) (centreX - x)) / ((float) (centreY - y)));
r = (float) Math.sqrt(sqr(centreX - x) + sqr(centreY - y));
} else if (y > centreY) {
theta =
ImageMath.PI + (float) Math.atan(((float) (centreX - x)) / ((float) (y - centreY)));
r = (float) Math.sqrt(sqr(centreX - x) + sqr(y - centreY));
} else {
theta = 1.5f * ImageMath.PI;
r = centreX - x;
}
}
if (x != centreX) m = Math.abs(((float) (y - centreY)) / ((float) (x - centreX)));
else m = 0;
if (m <= ((float) height / (float) width)) {
if (x == centreX) {
xmax = 0;
ymax = centreY;
} else {
xmax = centreX;
ymax = m * xmax;
}
} else {
ymax = centreY;
xmax = ymax / m;
}
out[0] = (width - 1) - (width - 1) / ImageMath.TWO_PI * theta;
out[1] = height * r / radius;
break;
case POLAR_TO_RECT:
theta = x / width * ImageMath.TWO_PI;
float theta2;
if (theta >= 1.5f * ImageMath.PI) theta2 = ImageMath.TWO_PI - theta;
else if (theta >= ImageMath.PI) theta2 = theta - ImageMath.PI;
else if (theta >= 0.5f * ImageMath.PI) theta2 = ImageMath.PI - theta;
else theta2 = theta;
t = (float) Math.tan(theta2);
if (t != 0) m = 1.0f / t;
else m = 0;
if (m <= ((float) (height) / (float) (width))) {
if (theta2 == 0) {
xmax = 0;
ymax = centreY;
} else {
xmax = centreX;
ymax = m * xmax;
}
} else {
ymax = centreY;
xmax = ymax / m;
}
r = radius * (float) (y / (float) (height));
float nx = -r * (float) Math.sin(theta2);
float ny = r * (float) Math.cos(theta2);
if (theta >= 1.5f * ImageMath.PI) {
out[0] = (float) centreX - nx;
out[1] = (float) centreY - ny;
} else if (theta >= Math.PI) {
out[0] = (float) centreX - nx;
out[1] = (float) centreY + ny;
} else if (theta >= 0.5 * Math.PI) {
out[0] = (float) centreX + nx;
out[1] = (float) centreY + ny;
} else {
out[0] = (float) centreX + nx;
out[1] = (float) centreY - ny;
}
break;
case INVERT_IN_CIRCLE:
float dx = x - centreX;
float dy = y - centreY;
float distance2 = dx * dx + dy * dy;
out[0] = centreX + centreX * centreX * dx / distance2;
out[1] = centreY + centreY * centreY * dy / distance2;
break;
}
}
public void actionPerformed(ActionEvent evt) {
Graphics g = getGraphics();
if (evt.getSource() == openItem) {
JFileChooser chooser = new JFileChooser();
common.chooseFile(chooser, "./images", 0); // 设置默认目录,过滤文件
int r = chooser.showOpenDialog(null);
if (r == JFileChooser.APPROVE_OPTION) {
String name = chooser.getSelectedFile().getAbsolutePath();
// 装载图像
iImage = common.openImage(name, new MediaTracker(this));
// 取载入图像的宽和高
iw = iImage.getWidth(null);
ih = iImage.getHeight(null);
bImage = new BufferedImage(iw, ih, BufferedImage.TYPE_INT_RGB);
Graphics2D g2 = bImage.createGraphics();
g2.drawImage(iImage, 0, 0, null);
loadflag = true;
repaint();
}
} else if (evt.getSource() == rotateItem) // 内置旋转
{
setTitle("第4章 图像几何变换 内置旋转 作者 孙燮华");
common.draw(g, iImage, bImage, common.getParam("旋转角(度):", "30"), 0, 0);
} else if (evt.getSource() == scaleItem) // 内置缩放
{
setTitle("第4章 图像几何变换 内置缩放 作者 孙燮华");
// 参数选择面板
Parameters pp = new Parameters("参数", "x方向:", "y方向:", "1.5", "1.5");
setPanel(pp, "内置缩放");
float x = pp.getPadx();
float y = pp.getPady();
common.draw(g, iImage, bImage, x, y, 1);
} else if (evt.getSource() == shearItem) // 内置错切
{
setTitle("第4章 图像几何变换 内置错切 作者 孙燮华");
Parameters pp = new Parameters("参数", "x方向:", "y方向:", "0.5", "0.5");
setPanel(pp, "内置错切");
float x = pp.getPadx();
float y = pp.getPady();
common.draw(g, iImage, bImage, x, y, 2);
} else if (evt.getSource() == transItem) // 内置平移
{
setTitle("第4章 图像几何变换 内置平移 作者 孙燮华");
Parameters pp = new Parameters("参数", "x方向:", "y方向:", "100", "50");
setPanel(pp, "内置平移");
float x = pp.getPadx();
float y = pp.getPady();
common.draw(g, iImage, bImage, x, y, 3);
} else if (evt.getSource() == rotItem) // 旋转算法
{
setTitle("第4章 图像几何变换 旋转算法 作者 孙燮华");
pix = common.grabber(iImage, iw, ih);
// 旋转,输出图像宽高
int owh = (int) (Math.sqrt(iw * iw + ih * ih + 0.5));
opix = geom.imRotate(pix, common.getParam("旋转角(度):", "30"), iw, ih, owh);
// 将数组中的象素产生一个图像
MemoryImageSource memoryImage =
new MemoryImageSource(owh, owh, ColorModel.getRGBdefault(), opix, 0, owh);
oImage = createImage(memoryImage);
common.draw(g, iImage, oImage, iw, ih, owh, 4);
} else if (evt.getSource() == mirItem) // 镜象算法(type:5)
{
setTitle("第4章 图像几何变换 镜象算法 作者 孙燮华");
Parameters pp = new Parameters("选择镜象类型", "水平", "垂直");
setPanel(pp, "镜象算法");
pix = common.grabber(iImage, iw, ih);
opix = geom.imMirror(pix, iw, ih, pp.getRadioState());
ImageProducer ip = new MemoryImageSource(iw, ih, opix, 0, iw);
oImage = createImage(ip);
common.draw(g, iImage, oImage, iw, ih, 0, 5);
} else if (evt.getSource() == shrItem) // 错切算法(type:6)
{
setTitle("第4章 图像几何变换 错切算法 作者 孙燮华");
Parameters pp = new Parameters("参数", "x方向:", "y方向:", "0.5", "0.5");
setPanel(pp, "错切算法");
pix = common.grabber(iImage, iw, ih);
float shx = pp.getPadx();
float shy = pp.getPady();
// 计算包围盒的宽和高
int ow = (int) (iw + (ih - 1) * shx);
int oh = (int) ((iw - 1) * shy + ih);
if (shx > 0 && shy > 0) {
opix = geom.imShear(pix, shx, shy, iw, ih, ow, oh);
ImageProducer ip = new MemoryImageSource(ow, oh, opix, 0, ow);
oImage = createImage(ip);
common.draw(g, iImage, oImage, iw, ih, 0, 6);
} else JOptionPane.showMessageDialog(null, "参数必须为正数!");
} else if (evt.getSource() == trnItem) {
setTitle("第4章 图像几何变换 平移算法 作者 孙燮华");
Parameters pp = new Parameters("参数", "x方向:", "y方向:", "100", "50");
setPanel(pp, "平移算法");
pix = common.grabber(iImage, iw, ih);
int tx = (int) pp.getPadx();
int ty = (int) pp.getPady();
if (tx > 0 && ty > 0) {
int ow = iw + tx;
int oh = ih + ty;
opix = geom.imTrans(pix, tx, ty, iw, ih, ow, oh);
ImageProducer ip = new MemoryImageSource(ow, oh, opix, 0, ow);
oImage = createImage(ip);
common.draw(g, iImage, oImage, iw, ih, 0, 7);
} else JOptionPane.showMessageDialog(null, "参数必须为正数!");
} else if (evt.getSource() == nearItem) {
setTitle("第4章 图像几何变换 最邻近插值算法 作者 孙燮华");
pix = common.grabber(iImage, iw, ih);
float p =
(Float.valueOf(JOptionPane.showInputDialog(null, "输入缩放参数(0.1-3.0)", "1.50")))
.floatValue();
int ow = (int) (p * iw); // 计算目标图宽高
int oh = (int) (p * ih);
opix = geom.nearNeighbor(pix, iw, ih, ow, oh, p);
ImageProducer ip = new MemoryImageSource(ow, oh, opix, 0, ow);
oImage = createImage(ip);
common.draw(g, oImage, "最邻近插值", p);
} else if (evt.getSource() == linrItem) {
setTitle("第4章 图像几何变换 双线性插值算法 作者 孙燮华");
pix = common.grabber(iImage, iw, ih);
float p =
(Float.valueOf(JOptionPane.showInputDialog(null, "输入缩放参数(0.1-3.0)", "1.50")))
.floatValue();
int ow = (int) (p * iw); // 计算目标图宽高
int oh = (int) (p * ih);
opix = geom.bilinear(pix, iw, ih, ow, oh, p);
ImageProducer ip = new MemoryImageSource(ow, oh, opix, 0, ow);
oImage = createImage(ip);
common.draw(g, oImage, "双线性插值", p);
} else if (evt.getSource() == cubicItem) {
setTitle("第4章 图像几何变换 三次卷积插值算法 作者 孙燮华");
pix = common.grabber(iImage, iw, ih);
float p =
(Float.valueOf(JOptionPane.showInputDialog(null, "输入缩放参数(1.1-3.0)", "1.50")))
.floatValue();
if (p < 1) {
JOptionPane.showMessageDialog(null, "参数p必须大于1!");
return;
}
int ow = (int) (p * iw); // 计算目标图宽高
int oh = (int) (p * ih);
opix = geom.scale(pix, iw, ih, ow, oh, p, p);
ImageProducer ip = new MemoryImageSource(ow, oh, opix, 0, ow);
oImage = createImage(ip);
common.draw(g, oImage, "三次卷积插值", p);
} else if (evt.getSource() == okButton) dialog.dispose();
else if (evt.getSource() == exitItem) System.exit(0);
}
/** Regenerates the image. */
private synchronized void regenerateImage() {
int size =
Math.min(
MAX_SIZE,
Math.min(
getWidth() - imagePadding.left - imagePadding.right,
getHeight() - imagePadding.top - imagePadding.bottom));
if (mode == ColorPicker.BRI || mode == ColorPicker.SAT) {
float bri2 = this.bri;
float sat2 = this.sat;
float radius = ((float) size) / 2f;
float hue2;
float k = 1.2f; // the number of pixels to antialias
for (int y = 0; y < size; y++) {
float y2 = (y - size / 2f);
for (int x = 0; x < size; x++) {
float x2 = (x - size / 2f);
double theta = Math.atan2(y2, x2) - 3 * Math.PI / 2.0;
if (theta < 0) theta += 2 * Math.PI;
double r = Math.sqrt(x2 * x2 + y2 * y2);
if (r <= radius) {
if (mode == ColorPicker.BRI) {
hue2 = (float) (theta / (2 * Math.PI));
sat2 = (float) (r / radius);
} else { // SAT
hue2 = (float) (theta / (2 * Math.PI));
bri2 = (float) (r / radius);
}
row[x] = Color.HSBtoRGB(hue2, sat2, bri2);
if (r > radius - k) {
int alpha = (int) (255 - 255 * (r - radius + k) / k);
if (alpha < 0) alpha = 0;
if (alpha > 255) alpha = 255;
row[x] = row[x] & 0xffffff + (alpha << 24);
}
} else {
row[x] = 0x00000000;
}
}
image.getRaster().setDataElements(0, y, size, 1, row);
}
} else if (mode == ColorPicker.HUE) {
float hue2 = this.hue;
for (int y = 0; y < size; y++) {
float y2 = ((float) y) / ((float) size);
for (int x = 0; x < size; x++) {
float x2 = ((float) x) / ((float) size);
row[x] = Color.HSBtoRGB(hue2, x2, y2);
}
image.getRaster().setDataElements(0, y, image.getWidth(), 1, row);
}
} else { // mode is RED, GREEN, or BLUE
int red2 = red;
int green2 = green;
int blue2 = blue;
for (int y = 0; y < size; y++) {
float y2 = ((float) y) / ((float) size);
for (int x = 0; x < size; x++) {
float x2 = ((float) x) / ((float) size);
if (mode == ColorPicker.RED) {
green2 = (int) (x2 * 255 + .49);
blue2 = (int) (y2 * 255 + .49);
} else if (mode == ColorPicker.GREEN) {
red2 = (int) (x2 * 255 + .49);
blue2 = (int) (y2 * 255 + .49);
} else {
red2 = (int) (x2 * 255 + .49);
green2 = (int) (y2 * 255 + .49);
}
row[x] = 0xFF000000 + (red2 << 16) + (green2 << 8) + blue2;
}
image.getRaster().setDataElements(0, y, size, 1, row);
}
}
repaint();
}
public double getStd() {
return Math.sqrt(getVar());
}
/*
@Override
public void run() {
amIActive = true;
String shapefile = null;
String inputFieldsString = null;
String[] fieldNames = null;
double z;
int numFields;
int progress = 0;
int lastProgress = 0;
int row;
int a, i, j;
double[] fieldAverages;
double[] fieldTotals;
boolean standardizedPCA = false;
int numberOfComponentsOutput = 0;
if (args.length <= 0) {
showFeedback("Plugin parameters have not been set.");
return;
}
// read the input parameters
inputFieldsString = args[0];
standardizedPCA = Boolean.parseBoolean(args[1]);
if (args[2].toLowerCase().contains("not")) { // not specified
numberOfComponentsOutput = 0;
} else {
numberOfComponentsOutput = Integer.parseInt(args[2]);
}
try {
// deal with the input fields
String[] inputs = inputFieldsString.split(";");
shapefile = inputs[0];
numFields = inputs.length - 1;
fieldNames = new String[numFields];
System.arraycopy(inputs, 1, fieldNames, 0, numFields);
// read the appropriate field from the dbf file into an array
AttributeTable table = new AttributeTable(shapefile.replace(".shp", ".dbf"));
int numRecs = table.getNumberOfRecords();
DBFField[] fields = table.getAllFields();
ArrayList<Integer> PCAFields = new ArrayList<>();
for (j = 0; j < fieldNames.length; j++) {
for (i = 0; i < fields.length; i++) {
if (fields[i].getName().equals(fieldNames[j])
&& (fields[i].getDataType() == DBFField.DBFDataType.NUMERIC
|| fields[i].getDataType() == DBFField.DBFDataType.FLOAT)) {
PCAFields.add(i);
}
}
}
if (numFields != PCAFields.size()) {
showFeedback(
"Not all of the specified database fields were found in the file or "
+ "a field of a non-numerical type was selected.");
return;
}
double[][] fieldArray = new double[numRecs][numFields];
Object[] rec;
for (i = 0; i < numRecs; i++) {
rec = table.getRecord(i);
for (j = 0; j < numFields; j++) {
fieldArray[i][j] = (Double) (rec[PCAFields.get(j)]);
}
if (cancelOp) {
cancelOperation();
return;
}
progress = (int) (100f * i / (numRecs - 1));
if (progress != lastProgress) {
updateProgress("Reading data:", progress);
}
lastProgress = progress;
}
fieldAverages = new double[numFields];
fieldTotals = new double[numFields];
// Calculate the means
for (row = 0; row < numRecs; row++) {
for (i = 0; i < numFields; i++) {
fieldTotals[i] += fieldArray[row][i];
}
}
for (i = 0; i < numFields; i++) {
fieldAverages[i] = fieldTotals[i] / numRecs;
}
// Calculate the covariance matrix and total deviations
double[] fieldTotalDeviation = new double[numFields];
double[][] covariances = new double[numFields][numFields];
double[][] correlationMatrix = new double[numFields][numFields];
for (row = 0; row < numRecs; row++) {
for (i = 0; i < numFields; i++) {
fieldTotalDeviation[i] +=
(fieldArray[row][i] - fieldAverages[i]) * (fieldArray[row][i] - fieldAverages[i]);
for (a = 0; a < numFields; a++) {
covariances[i][a] +=
(fieldArray[row][i] - fieldAverages[i]) * (fieldArray[row][a] - fieldAverages[a]);
}
}
if (cancelOp) {
cancelOperation();
return;
}
progress = (int) (100f * row / (numRecs - 1));
if (progress != lastProgress) {
updateProgress("Calculating covariances:", progress);
}
lastProgress = progress;
}
for (i = 0; i < numFields; i++) {
for (a = 0; a < numFields; a++) {
correlationMatrix[i][a] =
covariances[i][a] / (Math.sqrt(fieldTotalDeviation[i] * fieldTotalDeviation[a]));
}
}
for (i = 0; i < numFields; i++) {
for (a = 0; a < numFields; a++) {
covariances[i][a] = covariances[i][a] / (numRecs - 1);
}
}
// Calculate the eigenvalues and eigenvectors
Matrix cov = null;
if (!standardizedPCA) {
cov = new Matrix(covariances);
} else {
cov = new Matrix(correlationMatrix);
}
EigenvalueDecomposition eigen = cov.eig();
double[] eigenvalues;
Matrix eigenvectors;
SortedSet<PrincipalComponent> principalComponents;
eigenvalues = eigen.getRealEigenvalues();
eigenvectors = eigen.getV();
double[][] vecs = eigenvectors.getArray();
int numComponents = eigenvectors.getColumnDimension(); // same as num rows.
principalComponents = new TreeSet<PrincipalComponent>();
for (i = 0; i < numComponents; i++) {
double[] eigenvector = new double[numComponents];
for (j = 0; j < numComponents; j++) {
eigenvector[j] = vecs[j][i];
}
principalComponents.add(new PrincipalComponent(eigenvalues[i], eigenvector));
}
double totalEigenvalue = 0;
for (i = 0; i < numComponents; i++) {
totalEigenvalue += eigenvalues[i];
}
double[][] explainedVarianceArray = new double[numComponents][2]; // percent and cum. percent
j = 0;
for (PrincipalComponent pc : principalComponents) {
explainedVarianceArray[j][0] = pc.eigenValue / totalEigenvalue * 100.0;
if (j == 0) {
explainedVarianceArray[j][1] = explainedVarianceArray[j][0];
} else {
explainedVarianceArray[j][1] =
explainedVarianceArray[j][0] + explainedVarianceArray[j - 1][1];
}
j++;
}
DecimalFormat df1 = new DecimalFormat("0.00");
DecimalFormat df2 = new DecimalFormat("0.0000");
DecimalFormat df3 = new DecimalFormat("0.000000");
DecimalFormat df4 = new DecimalFormat("0.000");
String ret = "Principal Component Analysis Report:\n\n";
ret += "Component\tExplained Var.\tCum. %\tEigenvalue\tEigenvector\n";
j = 0;
for (PrincipalComponent pc : principalComponents) {
String explainedVariance = df1.format(explainedVarianceArray[j][0]);
String explainedCumVariance = df1.format(explainedVarianceArray[j][1]);
double[] eigenvector = pc.eigenVector.clone();
ret +=
(j + 1)
+ "\t"
+ explainedVariance
+ "\t"
+ explainedCumVariance
+ "\t"
+ df2.format(pc.eigenValue)
+ "\t";
String eigenvec = "[";
for (i = 0; i < numComponents; i++) {
if (i < numComponents - 1) {
eigenvec += df3.format(eigenvector[i]) + ", ";
} else {
eigenvec += df3.format(eigenvector[i]);
}
}
eigenvec += "]";
ret += eigenvec + "\n";
if (j < numberOfComponentsOutput) {
DBFField field = new DBFField();
field = new DBFField();
field.setName("COMP" + (j + 1));
field.setDataType(DBFField.DBFDataType.NUMERIC);
field.setFieldLength(10);
field.setDecimalCount(4);
table.addField(field);
for (row = 0; row < numRecs; row++) {
z = 0;
for (i = 0; i < numFields; i++) {
z += fieldArray[row][i] * eigenvector[i];
}
Object[] recData = table.getRecord(row);
recData[recData.length - 1] = new Double(z);
table.updateRecord(row, recData);
if (cancelOp) {
cancelOperation();
return;
}
progress = (int) (100f * row / (numRecs - 1));
if (progress != lastProgress) {
updateProgress("Outputing Component " + (j + 1) + ":", progress);
}
lastProgress = progress;
}
}
j++;
}
// calculate the factor loadings.
ret += "\nFactor Loadings:\n";
ret += "\t\tComponent\n\t";
for (i = 0; i < numComponents; i++) {
ret += (i + 1) + "\t";
}
ret += "\n";
double loading = 0;
if (!standardizedPCA) {
for (i = 0; i < numFields; i++) {
ret += "field " + (i + 1) + "\t";
for (PrincipalComponent pc : principalComponents) {
double[] eigenvector = pc.eigenVector.clone();
double ev = pc.eigenValue;
loading = (eigenvector[i] * Math.sqrt(ev)) / Math.sqrt(covariances[i][i]);
ret += df4.format(loading) + "\t";
}
ret += "\n";
}
} else {
for (i = 0; i < numFields; i++) {
ret += "field " + (i + 1) + "\t";
for (PrincipalComponent pc : principalComponents) {
double[] eigenvector = pc.eigenVector.clone();
double ev = pc.eigenValue;
loading = (eigenvector[i] * Math.sqrt(ev));
ret += df4.format(loading) + "\t";
}
ret += "\n";
}
}
ret += "\n";
for (i = 0; i < numFields; i++) {
ret += "field " + (i + 1) + "\t" + fieldNames[i] + "\n";
}
returnData(ret);
if (numberOfComponentsOutput > 0) {
returnData(table.getFileName());
}
ScreePlot plot = new ScreePlot(explainedVarianceArray);
returnData(plot);
} catch (OutOfMemoryError oe) {
myHost.showFeedback("An out-of-memory error has occurred during operation.");
} catch (Exception e) {
myHost.showFeedback("An error has occurred during operation. See log file for details.");
myHost.logException("Error in " + getDescriptiveName(), e);
} finally {
updateProgress("Progress: ", 0);
// tells the main application that this process is completed.
amIActive = false;
myHost.pluginComplete();
}
}
/*.................................................................................................................*/
public Object doCommand(String commandName, String arguments, CommandChecker checker) {
Tree trt = treeDisplay.getTree();
MesquiteTree t = null;
if (trt instanceof MesquiteTree) t = (MesquiteTree) trt;
if (checker.compare(
this.getClass(),
"Adjust tool has touched branch",
"[branch number][x coordinate touched][y coordinate touched][modifiers]",
commandName,
"touchedPositionAdjust")) {
if (t == null) return null;
MesquiteInteger io = new MesquiteInteger(0);
int node = MesquiteInteger.fromString(arguments, io);
int x = MesquiteInteger.fromString(arguments, io);
int y = MesquiteInteger.fromString(arguments, io);
String mod = ParseUtil.getRemaining(arguments, io);
Point newOnLine = treeDisplay.getTreeDrawing().projectionOnLine(node, x, y);
originalX = newOnLine.x;
originalY = newOnLine.y;
// lastX= newOnLine.x;
// lastY = newOnLine.y;
Graphics g = null;
if (GraphicsUtil.useXORMode(null, false)) {
g = treeDisplay.getGraphics();
g.setXORMode(Color.white);
g.setColor(Color.red);
}
// double bX = treeDisplay.getTreeDrawing().lineBaseX[node];
// double bY = treeDisplay.getTreeDrawing().lineBaseY[node];
// Math.sqrt((originalY-bY)*(originalY-bY) + (originalX-bX)*(originalX-bX));
lastBL = tree.getBranchLength(node);
double shortestAbove = MesquiteDouble.unassigned;
for (int daughter = t.firstDaughterOfNode(node);
t.nodeExists(daughter);
daughter = t.nextSisterOfNode(daughter))
shortestAbove = MesquiteDouble.minimum(shortestAbove, tree.getBranchLength(daughter));
if (shortestAbove == MesquiteDouble.unassigned) upperLimit = MesquiteDouble.infinite;
else if (MesquiteDouble.isCombinable(lastBL)) upperLimit = shortestAbove + lastBL;
else upperLimit = shortestAbove + 1.0;
int ibX = treeDisplay.getTreeDrawing().lineBaseX[node];
int ibY = treeDisplay.getTreeDrawing().lineBaseY[node];
lastX = treeDisplay.getTreeDrawing().lineTipX[node];
lastY = treeDisplay.getTreeDrawing().lineTipY[node];
if (GraphicsUtil.useXORMode(null, false)) {
drawThickLine(g, ibX, ibY, lastX, lastY);
for (int daughter = t.firstDaughterOfNode(node);
t.nodeExists(daughter);
daughter = t.nextSisterOfNode(daughter))
drawThickLine(
g,
treeDisplay.getTreeDrawing().lineTipX[daughter],
treeDisplay.getTreeDrawing().lineTipY[daughter],
lastX,
lastY);
g.fillOval(
lastX - ovalRadius,
lastY - ovalRadius,
ovalRadius + ovalRadius,
ovalRadius + ovalRadius);
try {
g.drawString(MesquiteDouble.toString(lastBL), lastX + 10, lastY);
} catch (InternalError e) { // workaround for bug on windows java 1.7.
} catch (Throwable e) {
}
lineOn = true;
g.dispose();
}
} else if (checker.compare(
this.getClass(),
"Adjust tool has been dropped",
"[branch number][x coordinate dropped][y coordinate dropped]",
commandName,
"droppedPositionAdjust")) {
if (t == null) return null;
if (editorOn) return null;
MesquiteInteger io = new MesquiteInteger(0);
int node = MesquiteInteger.fromString(arguments, io);
int x = MesquiteInteger.fromString(arguments, io);
int y = MesquiteInteger.fromString(arguments, io);
if (lineOn) {
Point newOnLine = treeDisplay.getTreeDrawing().projectionOnLine(node, x, y);
double bX = treeDisplay.getTreeDrawing().lineBaseX[node];
double bY = treeDisplay.getTreeDrawing().lineBaseY[node];
double tX = treeDisplay.getTreeDrawing().lineTipX[node];
double tY = treeDisplay.getTreeDrawing().lineTipY[node];
double lengthLine =
Math.sqrt((originalY - bY) * (originalY - bY) + (originalX - bX) * (originalX - bX));
double bL;
if (lengthLine != 0) {
double extension =
Math.sqrt(
(newOnLine.y - bY) * (newOnLine.y - bY)
+ (newOnLine.x - bX) * (newOnLine.x - bX))
/ lengthLine;
if (t.getBranchLength(node) == 0 || t.branchLengthUnassigned(node)) bL = extension;
else bL = t.getBranchLength(node) * extension;
} else bL = 1;
if (bL > upperLimit) bL = upperLimit;
else if (bL < lowerLimit) bL = lowerLimit;
double oldBL = t.getBranchLength(node);
if (!MesquiteDouble.isCombinable(oldBL)) oldBL = 1.0;
t.setBranchLength(node, bL, false);
double difference = oldBL - t.getBranchLength(node);
for (int daughter = t.firstDaughterOfNode(node);
t.nodeExists(daughter);
daughter = t.nextSisterOfNode(daughter))
if (MesquiteDouble.isCombinable(t.getBranchLength(daughter)))
t.setBranchLength(daughter, t.getBranchLength(daughter) + difference, false);
t.notifyListeners(this, new Notification(MesquiteListener.BRANCHLENGTHS_CHANGED));
Graphics g = treeDisplay.getGraphics();
g.setPaintMode();
g.dispose();
treeDisplay.pleaseUpdate(true);
lineOn = false;
}
} else if (checker.compare(
this.getClass(),
"Adjust tool is being dragged",
"[branch number][x coordinate][y coordinate]",
commandName,
"draggedPositionAdjust")) {
if (t == null) return null;
if (editorOn) return null;
MesquiteInteger io = new MesquiteInteger(0);
int node = MesquiteInteger.fromString(arguments, io);
int x = MesquiteInteger.fromString(arguments, io);
int y = MesquiteInteger.fromString(arguments, io);
if (lineOn) {
Point newOnLine = treeDisplay.getTreeDrawing().projectionOnLine(node, x, y);
// WARNING": This shouldn't result in length increase if simple click and release with no
// drag; must subtract original X, Y
Graphics g = null;
if (GraphicsUtil.useXORMode(null, false)) {
g = treeDisplay.getGraphics();
g.setXORMode(Color.white);
g.setColor(Color.red);
}
// g.fillOval(lastX-ovalRadius, lastY-ovalRadius, ovalRadius + ovalRadius, ovalRadius +
// ovalRadius);
// g.fillOval(newOnLine.x-ovalRadius, newOnLine.y -ovalRadius, ovalRadius + ovalRadius,
// ovalRadius + ovalRadius);
// g.drawLine(originalX, originalY, lastX, lastY);
// g.drawLine(originalX, originalY, newOnLine.x, newOnLine.y);
// if decreasing, & unassigned involved: push unassigned down and assign values to
// unassigned above; if increasing, push unassigne up
int ibX = treeDisplay.getTreeDrawing().lineBaseX[node];
int ibY = treeDisplay.getTreeDrawing().lineBaseY[node];
int itX = treeDisplay.getTreeDrawing().lineTipX[node];
int itY = treeDisplay.getTreeDrawing().lineTipY[node];
double bX = ibX;
double bY = ibY;
double tX = itX;
double tY = itY;
double lengthLine =
Math.sqrt((originalY - bY) * (originalY - bY) + (originalX - bX) * (originalX - bX));
if (lengthLine != 0) {
if (GraphicsUtil.useXORMode(null, false)) {
if (MesquiteTrunk.isMacOSX()
&& MesquiteTrunk.getJavaVersionAsDouble() >= 1.5
&& MesquiteTrunk.getJavaVersionAsDouble() < 1.6) // due to a JVM bug
g.fillRect(lastX, lastY - 20, 100, 20);
g.drawString(MesquiteDouble.toString(lastBL), lastX + 10, lastY);
if (MesquiteTrunk.isMacOSX()
&& MesquiteTrunk.getJavaVersionAsDouble() >= 1.5
&& MesquiteTrunk.getJavaVersionAsDouble() < 1.6) // due to a JVM bug
g.fillRect(lastX, lastY - 20, 100, 20);
}
double extension =
Math.sqrt(
(newOnLine.y - bY) * (newOnLine.y - bY)
+ (newOnLine.x - bX) * (newOnLine.x - bX))
/ lengthLine;
double bL;
if (t.getBranchLength(node) == 0 || t.branchLengthUnassigned(node)) bL = extension;
else bL = t.getBranchLength(node) * extension;
if (bL > upperLimit) {
bL = upperLimit;
if (t.getBranchLength(node) == 0 || t.branchLengthUnassigned(node))
extension = upperLimit;
else extension = upperLimit / t.getBranchLength(node);
} else if (bL < lowerLimit) {
bL = lowerLimit;
if (t.getBranchLength(node) == 0 || t.branchLengthUnassigned(node))
extension = lowerLimit;
else extension = lowerLimit / t.getBranchLength(node);
}
lastBL = bL;
if (GraphicsUtil.useXORMode(null, false)) {
drawThickLine(g, ibX, ibY, lastX, lastY);
for (int daughter = t.firstDaughterOfNode(node);
t.nodeExists(daughter);
daughter = t.nextSisterOfNode(daughter))
drawThickLine(
g,
treeDisplay.getTreeDrawing().lineTipX[daughter],
treeDisplay.getTreeDrawing().lineTipY[daughter],
lastX,
lastY);
g.fillOval(
lastX - ovalRadius,
lastY - ovalRadius,
ovalRadius + ovalRadius,
ovalRadius + ovalRadius);
}
int newX = ibX + (int) (extension * (tX - bX));
int newY = ibY + (int) (extension * (tY - bY));
if (GraphicsUtil.useXORMode(null, false)) {
g.drawString(MesquiteDouble.toString(bL), newX + 10, newY);
drawThickLine(g, ibX, ibY, newX, newY);
for (int daughter = t.firstDaughterOfNode(node);
t.nodeExists(daughter);
daughter = t.nextSisterOfNode(daughter))
drawThickLine(
g,
treeDisplay.getTreeDrawing().lineTipX[daughter],
treeDisplay.getTreeDrawing().lineTipY[daughter],
newX,
newY);
g.fillOval(
newX - ovalRadius,
newY - ovalRadius,
ovalRadius + ovalRadius,
ovalRadius + ovalRadius);
}
lastX = newX;
lastY = newY;
}
// lastX= newOnLine.x;
// lastY = newOnLine.y;
}
}
return null;
}
private float distance(float a, float b) {
return (float) Math.sqrt(a * a + b * b);
}
/**
* Applies a gaussian blur filter to the given image. Apart from the filter radius, you can also
* specify an alpha factor which will be multiplied with the filter's result. Also, you can
* specify whether the blurred image should be rendered into a newly created BufferedImage
* instance or into the original image. If you request a new image instance, the result will be
* larger than the original one as a (2*filterradius) pixel wide padding will be applied.
*
* @param image the image to be blurred.
* @param filterRadius the radius of the gaussian filter to apply. The corresponding kernel will
* be sized 2 * filterRadius + 1;
* @param alphaFactor a factor which will be multiplied with the filtered image. You can use this
* parameter to weaken or strengthen the colors in the blurred image.
* @param useOriginalImageAsDestination Determines whether the blur result should be rendered into
* the original image or into a new image instance. If you choose to create a new image
* instance, the result will be larger than the original image to provide the required padding
* for the blur effect.
* @return An image instance containing a blurred version of the given image.
*/
public static BufferedImage applyGaussianBlur(
final BufferedImage image,
final int filterRadius,
final float alphaFactor,
final boolean useOriginalImageAsDestination) {
if (filterRadius < 1) {
throw new IllegalArgumentException(
"Illegal filter radius: expected to be >= 1, was " + filterRadius);
}
float[] kernel = new float[2 * filterRadius + 1];
final float sigma = filterRadius / 3f;
final float alpha = 2f * sigma * sigma;
final float rootAlphaPI = (float) Math.sqrt(alpha * Math.PI);
float sum = 0;
for (int i = -0; i < kernel.length; i++) {
final int d = -((i - filterRadius) * (i - filterRadius));
kernel[i] = (float) (Math.exp(d / alpha) / rootAlphaPI);
sum += kernel[i];
}
for (int i = 0; i < kernel.length; i++) {
kernel[i] /= sum;
kernel[i] *= alphaFactor;
}
final Kernel horizontalKernel = new Kernel(kernel.length, 1, kernel);
final Kernel verticalKernel = new Kernel(1, kernel.length, kernel);
synchronized (BlurUtils.class) {
final int blurredWidth =
useOriginalImageAsDestination ? image.getWidth() : image.getWidth() + 4 * filterRadius;
final int blurredHeight =
useOriginalImageAsDestination ? image.getHeight() : image.getHeight() + 4 * filterRadius;
final BufferedImage img0 = ensureBuffer0Capacity(blurredWidth, blurredHeight);
final Graphics2D graphics0 = img0.createGraphics();
graphics0.drawImage(
image,
null,
useOriginalImageAsDestination ? 0 : 2 * filterRadius,
useOriginalImageAsDestination ? 0 : 2 * filterRadius);
graphics0.dispose();
final BufferedImage img1 = ensureBuffer1Capacity(blurredWidth, blurredHeight);
final Graphics2D graphics1 = img1.createGraphics();
graphics1.drawImage(
img0, new ConvolveOp(horizontalKernel, ConvolveOp.EDGE_NO_OP, null), 0, 0);
graphics1.dispose();
BufferedImage destination =
useOriginalImageAsDestination
? image
: new BufferedImage(blurredWidth, blurredHeight, BufferedImage.TYPE_INT_ARGB);
final Graphics2D destGraphics = destination.createGraphics();
destGraphics.drawImage(
img1, new ConvolveOp(verticalKernel, ConvolveOp.EDGE_NO_OP, null), 0, 0);
destGraphics.dispose();
return destination;
}
}