@Override
protected void createObjects() throws IOException {
ChemkinMechanism mechanism = parse();
MechanismMoleculesToDatabaseTransaction moltransaction =
(MechanismMoleculesToDatabaseTransaction) getInputSource(moleculesS);
moleculeNamesTable = moltransaction.getMoleculeMap();
ChemkinReactionList reactionList = mechanism.getReactionList();
ArrayList<DatabaseObject> chemkinReactionList = new ArrayList<DatabaseObject>();
ArrayList<DatabaseObject> coefficients = new ArrayList<DatabaseObject>();
ArrayList<DatabaseObject> photoList = new ArrayList<DatabaseObject>();
for (ChemkinReaction reaction : reactionList) {
String rxnkeyword = getKeyword(reaction);
ChemkinReactionData rxndata = create(rxnkeyword, reaction, coefficients);
if (reaction.isHvLight()) {
PhotoChemicalReaction photo =
new PhotoChemicalReaction(keyword, rxnkeyword, reaction.isHvLightAsReactant());
photoList.add(photo);
}
chemkinReactionList.add(rxndata);
}
StorageAndRetrievalUtilities.storeDatabaseObjects(chemkinReactionList);
StorageAndRetrievalUtilities.storeDatabaseObjects(coefficients);
StorageAndRetrievalUtilities.storeDatabaseObjects(photoList);
rxntransaction.setReactionCount(chemkinReactionList.size());
}
