public void psaTest() {
PSAdata p = new PSAdata();
AnalyteStat psa = ComputeAnalyteStats.computeMonth(p.getMonth(7), "psa", 7);
// Values from Excel
int total = 2346;
// numeric excluding <0.03 = 2277
// numeric including 0.029 = 2339
int totalValid = 2339;
// other "U" = 7
Integer countU = 7;
// Min 0.029
// 2.5 0.029
// 25 0.71
// 50 1.35
// 75 3.16
// 97.5 20.31
// Max 10106
// 65th 2.127
// Mean: 9.458323215
// TODO These test figures are wrong becuase we're now filtering out weekends!
// assertEquals(total, psa.getInputCount());
// assertEquals(totalValid, psa.getValidCount());
// assertEquals(countU, psa.getOtherData().get("U"));
//
// assertEquals(0.029, psa.getMin(), 0.001);
//
// assertEquals(0.029, psa.getPercentile(0.025), 0.001);
// assertEquals(0.71, psa.getPercentile(0.25), 0.001);
// assertEquals(1.35, psa.getPercentile(0.5), 0.001);
// assertEquals(3.16, psa.getPercentile(0.75), 0.001);
// assertEquals(20.31, psa.getPercentile(0.975), 0.001);
//
// assertEquals(2.127, psa.getPercentile(0.65), 0.001);
//
// assertEquals(10106, psa.getMax(), 0.001);
//
// assertEquals(9.458, psa.getMean(), 0.001);
// TODO lots more tests
}
@Ignore
@Test
public void sorting() {
PSAdata pd = new PSAdata();
HashMap<LocalDate, AnalyteStat> allDailyAnalyteStats = new HashMap<LocalDate, AnalyteStat>();
List<AnalyteResult> analyteResultsList;
List<AnalyteDate> allVaildAnalyteDates = new ArrayList<AnalyteDate>();
List<AnalyteDate> allInVaildAnalyteDates = new ArrayList<AnalyteDate>();
// the RAW data are here
analyteResultsList = pd.getResults();
// hm contains the results divided by day.
// The analytes are still mixed up though.
HashMap<LocalDate, List<String>> hm = new HashMap<LocalDate, List<String>>();
for (AnalyteResult r : analyteResultsList) {
if (hm.get(r.getDate()) == null) hm.put(r.getDate(), new ArrayList<String>());
hm.get(r.getDate()).add(r.getResult());
}
for (LocalDate day : hm.keySet()) {
AnalyteDate d = new AnalyteDate("psa", day.toDate(), hm.get(day));
AnalyteStat s = ComputeAnalyteStats.computeDay(d, "psa");
if (s.getIsValid()) {
allDailyAnalyteStats.put(day, s);
allVaildAnalyteDates.add(d);
} else allInVaildAnalyteDates.add(d);
}
ComputeAnalyteStats.getMovingMeanOfMedian(allDailyAnalyteStats, 50);
ComputeAnalyteStats.getMovingMeanOfMedian(allDailyAnalyteStats, 7);
ComputeAnalyteStats.getMovingMeanOfMedian(allDailyAnalyteStats, 20);
ComputeAnalyteStats.getMovingMean(allDailyAnalyteStats, 50);
ComputeAnalyteStats.getMovingMean(allDailyAnalyteStats, 7);
ComputeAnalyteStats.getMovingMean(allDailyAnalyteStats, 20);
List<AnalyteStat> stats = new ArrayList<AnalyteStat>();
for (AnalyteStat as : allDailyAnalyteStats.values()) stats.add(as);
Collections.sort(stats);
for (AnalyteStat a : stats) System.out.println(a.getIncludedDates().get(0).toString());
}
@SuppressWarnings("deprecation")
public void constructor() {
Date statDate = new Date();
statDate.setYear(2009);
statDate.setMonth(0);
statDate.setDate(2);
String statType = "Folate";
String[] readings = {
"11.1", "14.5", "17.9", "8.7", "15.7", "12.3", "2.8", "14.9", "4.5", "7.8", "6.6", "10.6",
"23.0", "19.0", "4.7", "9.5", "7.1", "13.5", "9.5", "3.5", "16.1", "21.7", "11.2", "9.8",
"13.8", "20.7", "6.6", "4.2", "6.2", "19.9", "15.9", "21.8", "9.0"
};
AnalyteDate day = new AnalyteDate(statType, statDate, Arrays.asList(readings));
// Maybe this should take in an array of number and just have getters
AnalyteStat folate02Jan2009 = ComputeAnalyteStats.computeDay(day, statType);
double min = 2.8;
double i2p5th = 3.36;
double i25th = 7.1;
double median = 11.1;
double mean = 11.942;
String[] mode = new String[] {"6.6", "9.5"};
double i75th = 15.9;
double i97p5th = 22.04;
double max = 23.0;
assertEquals(statDate, folate02Jan2009.getIncludedDates().get(0));
assertEquals(statType, folate02Jan2009.getAnalyteType());
assertEquals(min, folate02Jan2009.getMin(), 0.001);
// assertEquals(i2p5th, folate02Jan2009.getPercentile(0.025), 0.001);
// assertEquals(i25th, folate02Jan2009.getPercentile(0.25), 0.001);
// assertEquals(median, folate02Jan2009.getPercentile(0.5), 0.001);
assertEquals(mean, folate02Jan2009.getMean(), 0.001);
// assertTrue(Arrays.asList(mode).contains(folate02Jan2009.getMode()[0]));
// assertEquals(i75th, folate02Jan2009.getPercentile(0.75), 0.001);
// assertEquals(i97p5th, folate02Jan2009.getPercentile(0.975), 0.001);
assertEquals(max, folate02Jan2009.getMax(), 0.001);
}
