@Test
public void testExecuteForControlMapping() {
action.setControlSampleFile(TestDataFiles.REMBRANDT_CONTROL_SAMPLES_FILE);
action.setControlSampleSetName("ControlSampleSet1");
assertEquals(ActionSupport.SUCCESS, action.execute());
assertTrue(studyManagementServiceStub.addControlSampleSetCalled);
}
@Override
@Before
public void setUp() throws Exception {
super.setUp();
studyManagementServiceStub = new StudyManagementServiceStub();
action = new SaveSampleMappingAction();
action.setStudyManagementService(studyManagementServiceStub);
action.setWorkspaceService(workspaceService);
}
@Test
public void testValidateForControlMapping() {
StudyConfiguration studyConfiguration = new StudyConfiguration();
action.setStudyConfiguration(studyConfiguration);
action.validate();
assertTrue(action.hasErrors());
action.clearErrorsAndMessages();
action.setControlSampleSetName("ControlSampleSet1");
action.validate();
assertTrue(action.hasErrors());
action.clearErrorsAndMessages();
action.setControlSampleFile(TestDataFiles.REMBRANDT_CONTROL_SAMPLES_FILE);
action.validate();
assertFalse(action.hasFieldErrors());
action.clearErrorsAndMessages();
SampleSet controlSampleSet = new SampleSet();
controlSampleSet.setName("ControlSampleSet1");
GenomicDataSourceConfiguration genomicSource = new GenomicDataSourceConfiguration();
studyConfiguration.getGenomicDataSources().add(genomicSource);
genomicSource.getControlSampleSetCollection().add(controlSampleSet);
action.validate();
assertTrue(action.hasFieldErrors());
}
@Test
public void testExecuteForSampleMapping() {
action.setSampleMappingFile(TestDataFiles.VALID_FILE);
Study study = action.getStudyConfiguration().getStudy();
study.setShortTitleText("Invalid");
assertEquals(Action.INPUT, action.execute());
study.setShortTitleText("IOException");
assertEquals(Action.INPUT, action.execute());
study.setShortTitleText("Valid");
assertEquals(Action.SUCCESS, action.execute());
assertTrue(action.isFileUpload());
action.setSampleMappingFile(null);
assertEquals(null, action.getSampleMappingFile());
action.setSampleMappingFileContentType("Genomic");
assertEquals("Genomic", action.getSampleMappingFileContentType());
assertEquals(null, action.getSampleMappingFileFileName());
action.validate();
assertTrue(action.hasFieldErrors());
action.setSampleMappingFileFileName("TestFile");
assertEquals("TestFile", action.getSampleMappingFileFileName());
action.validate();
}
