/**
* Two AnnotationSet are equal if their name, the documents of which belong to the AnnotationSets
* and annotations from the sets are the same
*/
public static boolean annotationSetsEqual(AnnotationSet as1, AnnotationSet as2) {
if (as1 == null ^ as2 == null) return false;
if (as1 == null) return true;
// Sets equality
if (as1.size() != as2.size()) return false;
try {
if (!as1.containsAll(as2)) return false;
} catch (ClassCastException unused) {
return false;
} catch (NullPointerException unused) {
return false;
}
// removed to prevent infinite looping in testDocumentsEqual()
// // verify the documents which they belong to
// if (! check (as1.getDocument(), as2.getDocument())) return false;
// verify the name of the AnnotationSets
if (!check(as1.getName(), as2.getName())) return false;
return true;
} // equals
private RetObj ProcessRecords() throws Exception {
// Create a Corpus to use. We recycle the same Corpus object for each
// iteration.
Corpus corpus = Factory.newCorpus("BatchProcessApp Corpus");
this.application.setCorpus(corpus);
// object for returned data
List<String> processedlines = new ArrayList<String>();
List<String> processedText = new ArrayList<String>();
for (int record_num = 0; record_num < this.recs.size(); ++record_num) {
/*if( record_num % Math.ceil(((double) this.recs.size())/10.0) == 0)
System.out.println("Thread " + this.threadID + ": "+ ((int) ((double)record_num)/((double) this.recs.size())*100.0 ) +"% complete.");
*/
// first, split title from body and get embedded age in title..
String title_age = "-1";
String sep = "..THIS IS MY SEPARATION STRING..";
String title = "";
String body = this.recs.get(record_num);
Boolean trimmed = false;
int age_end = body.indexOf(",> ");
if (age_end >= 0 && age_end < body.length()) {
int age_start = body.lastIndexOf("-", age_end);
if (age_start >= 0 && age_start < age_end) {
title_age = body.substring(age_start + 1, age_end).trim();
if (!isInteger(title_age)) title_age = "-1";
else {
title = body.substring(0, age_start);
body = body.substring(age_end + 2, body.length());
body = title + sep + body;
trimmed = true;
}
}
if (!trimmed) {
title = body.substring(0, age_end);
body = body.substring(age_end + 2, body.length());
body = title + sep + body;
trimmed = true;
}
}
// --------------------
org.jsoup.nodes.Document htmldoc =
Jsoup.parseBodyFragment(body.replaceAll("COMMA_GOES_HERE", ","));
Elements links = htmldoc.select("a[href]");
Elements media = htmldoc.select("[src]");
Elements imports = htmldoc.select("link[href]");
processedText.add(htmldoc.text().replace(sep, " "));
Document doc = Factory.newDocument(htmldoc.text());
// put the document in the corpus
corpus.add(doc);
// run the application
this.application.execute();
// remove the document from the corpus again
corpus.clear();
// extract annotations
String line = "";
AnnotationSet Annots = doc.getAnnotations("");
Integer FirstPersonCount = 0, ThirdPersonCount = 0;
AnnotationSet FirstPerson = Annots.get("FirstPerson");
if (FirstPerson != null) FirstPersonCount = FirstPerson.size();
AnnotationSet ThirdPerson = Annots.get("ThirdPerson");
if (ThirdPerson != null) ThirdPersonCount = ThirdPerson.size();
line += FirstPersonCount.toString() + "," + ThirdPersonCount.toString() + ",";
AnnotationSet Names = Annots.get("Name");
if (Names == null || Names.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = Names.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("name");
if (Feat != null) line += Feat.toString();
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet Age = Annots.get("Age");
if (Age == null || Age.size() < 1) line += title_age + ",";
else {
Iterator<Annotation> Iter = Age.inDocumentOrder().iterator();
line += title_age + ";";
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("age");
if (Feat != null) line += Feat.toString();
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet Cost = Annots.get("Cost");
if (Cost == null || Cost.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = Cost.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("value");
if (Feat != null) line += Feat.toString();
else line += "none";
line += "/";
Feat = Ann.getFeatures().get("target_value");
if (Feat != null) line += Feat.toString();
else line += "none";
line += "/";
Feat = Ann.getFeatures().get("target_type");
if (Feat != null) line += Feat.toString();
else line += "none";
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet height = Annots.get("height");
if (height == null || height.size() < 1) line += ",,";
else {
String ft = "";
String inch = "";
Iterator<Annotation> Iter = height.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("feet");
if (Feat != null) ft += Feat.toString();
else ft += "none";
Feat = Ann.getFeatures().get("inches");
if (Feat != null) inch += Feat.toString();
else inch += "none";
if (Iter.hasNext()) {
ft += ";";
inch += ";";
}
}
line += ft + "," + inch + ",";
}
AnnotationSet weight = Annots.get("weight");
if (weight == null || weight.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = weight.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("pounds");
if (Feat != null) line += Feat.toString();
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet measurement = Annots.get("measurement");
if (measurement == null || measurement.size() < 1) line += ",,,,";
else {
String cup = "";
String chest = "";
String waist = "";
String hip = "";
Iterator<Annotation> Iter = measurement.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("cup");
if (Feat != null) cup += Feat.toString();
else cup += "none";
Feat = Ann.getFeatures().get("chest");
if (Feat != null) chest += Feat.toString();
else chest += "none";
Feat = Ann.getFeatures().get("waist");
if (Feat != null) waist += Feat.toString();
else waist += "none";
Feat = Ann.getFeatures().get("hip");
if (Feat != null) hip += Feat.toString();
else hip += "none";
if (Iter.hasNext()) {
cup += ";";
chest += ";";
waist += ";";
hip += ";";
}
}
line += cup + "," + chest + "," + waist + "," + hip + ",";
}
AnnotationSet Ethnicity = Annots.get("Ethnicity");
if (Ethnicity == null || Ethnicity.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = Ethnicity.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("ethnicity");
if (Feat != null)
line += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ");
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet SkinColor = Annots.get("SkinColor");
if (SkinColor == null || SkinColor.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = SkinColor.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("color");
if (Feat != null)
line += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ");
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet EyeColor = Annots.get("EyeColor");
if (EyeColor == null || EyeColor.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = EyeColor.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("color");
if (Feat != null)
line += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ");
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet HairColor = Annots.get("HairColor");
if (HairColor == null || HairColor.size() < 1) line += ",";
else {
Iterator<Annotation> Iter = HairColor.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("color");
if (Feat != null)
line += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ");
if (Iter.hasNext()) line += ";";
}
line += ",";
}
AnnotationSet Restriction = Annots.get("Restriction");
if (Restriction == null || Restriction.size() < 1) line += ",,,";
else {
String type = "";
String ethnicity = "";
String age = "";
Iterator<Annotation> Iter = Restriction.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("type");
if (Feat != null) type += Feat.toString();
else type += "none";
Feat = Ann.getFeatures().get("ethnicity");
if (Feat != null)
ethnicity += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ");
else ethnicity += "none";
Feat = Ann.getFeatures().get("age");
if (Feat != null) age += Feat.toString();
else age += "none";
if (Iter.hasNext()) {
type += ";";
ethnicity += ";";
age += ";";
}
}
line += type + "," + ethnicity + "," + age + ",";
}
AnnotationSet Phone = Annots.get("PhoneNumber");
if (Phone == null || Phone.size() < 1) line += ",,,";
else {
String value = "";
String state = "";
String city = "";
Iterator<Annotation> Iter = Phone.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("value");
if (Feat != null) value += Feat.toString();
else value += "none";
Feat = Ann.getFeatures().get("state");
if (Feat != null) state += Feat.toString();
else state += "none";
Feat = Ann.getFeatures().get("area");
if (Feat != null)
city += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ");
else city += "none";
if (Iter.hasNext()) {
value += ";";
state += ";";
city += ";";
}
}
line += value + "," + state + "," + city + ",";
}
String Emails = "";
AnnotationSet Email = Annots.get("Email");
if (Email == null || Email.size() < 1) Emails = "";
else {
Iterator<Annotation> Iter = Email.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("email");
if (Feat != null)
Emails += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ") + ";";
}
}
if (links != null) {
for (Element l : links) {
String href = l.attr("abs:href");
if (href == null) continue;
if (href.length() > 7 && href.substring(0, 7).toLowerCase().equals("mailto:")) {
Emails +=
href.substring(7, href.length()).replaceAll(",", " ").replaceAll(";", " ") + ";";
}
}
}
if (Emails.length() > 0 && Emails.substring(Emails.length() - 1, Emails.length()).equals(";"))
Emails = Emails.substring(0, Emails.length() - 1);
line += Emails + ",";
String Urls = "";
AnnotationSet Url = Annots.get("Url");
if (Url == null || Url.size() < 1) Urls = "";
else {
Iterator<Annotation> Iter = Url.inDocumentOrder().iterator();
while (Iter.hasNext()) {
Annotation Ann = Iter.next();
Object Feat = Ann.getFeatures().get("url");
if (Feat != null)
Urls += Feat.toString().toLowerCase().replaceAll(",", " ").replaceAll(";", " ") + ";";
}
}
if (links != null) {
for (Element l : links) {
String href = l.attr("abs:href");
if (href == null) continue;
if (href.length() <= 7 || !href.substring(0, 7).toLowerCase().equals("mailto:")) {
Urls += href.replaceAll(",", " ").replaceAll(";", " ") + ";";
}
}
}
if (imports != null) {
for (Element l : imports) {
String href = l.attr("abs:href");
if (href == null) continue;
Urls += href.replaceAll(",", " ").replaceAll(";", " ") + ";";
}
}
if (Urls.length() > 0 && Urls.substring(Urls.length() - 1, Urls.length()).equals(";"))
Urls = Urls.substring(0, Urls.length() - 1);
line += Urls + ",";
String Medias = "";
if (media != null) {
for (Element l : media) {
String src = l.attr("abs:src");
if (src == null) continue;
Medias += src.replaceAll(",", " ").replaceAll(";", " ") + ";";
}
}
if (Medias.length() > 0 && Medias.substring(Medias.length() - 1, Medias.length()).equals(";"))
Medias = Medias.substring(0, Medias.length() - 1);
line += Medias;
processedlines.add(line);
// Release the document, as it is no longer needed
Factory.deleteResource(doc);
}
Factory.deleteResource(corpus);
RetObj out = new RetObj(processedlines, processedText);
return out;
}
@Override
public void execute() throws ExecutionException {
AnnotationSet inputAS = document.getAnnotations(inputASName);
AnnotationSet outputAS = document.getAnnotations(outputASName);
AnnotationSet tagAS = document.getAnnotations(tagASName);
AnnotationSet annotsToTransfer = null;
boolean newID = copyAnnotations && inputAS.equals(outputAS);
mappings.clear();
// TODO clean this up so we don't have to repeat ourselves
if (configURL != null) {
BufferedReader in = null;
try {
in = new BomStrippingInputStreamReader(configURL.openStream());
String line = in.readLine();
while (line != null) {
if (!line.trim().equals("")) {
String[] data = line.split("=", 2);
String oldName = data[0].trim();
String newName = data.length == 2 ? data[1].trim() : null;
mappings.put(oldName, new Mapping(oldName, newName));
}
line = in.readLine();
}
} catch (IOException ioe) {
ioe.printStackTrace();
} finally {
IOUtils.closeQuietly(in);
}
} else if (annotationTypes != null) {
for (String type : annotationTypes) {
String[] data = type.split("=", 2);
String oldName = data[0].trim();
String newName = data.length == 2 ? data[1].trim() : null;
mappings.put(oldName, new Mapping(oldName, newName));
}
}
// else
// throw new
// ExecutionException("The annotation list and URL cannot both be null");
if (mappings.size() > 0) {
annotsToTransfer = inputAS.get(mappings.keySet());
} else {
// transfer everything
annotsToTransfer = inputAS.get();
}
// in case of no one annotation from some of annotationTypes
if (annotsToTransfer == null || annotsToTransfer.size() == 0) return;
// check if we have a BODY annotation
// if not, just copy all
if (textTagName == null || textTagName.equals("")) {
// remove from input set unless we copy only
if (!copyAnnotations) inputAS.removeAll(annotsToTransfer);
transferAnnotations(new ArrayList<Annotation>(annotsToTransfer), outputAS, newID);
return;
}
// get the BODY annotation
bodyAnnotations = tagAS.get(textTagName);
if (bodyAnnotations == null || bodyAnnotations.isEmpty()) {
// outputAS.addAll(inputAS);
if (transferAllUnlessFound) {
// remove from input set unless we copy only
if (!copyAnnotations) inputAS.removeAll(annotsToTransfer);
transferAnnotations(new ArrayList<Annotation>(annotsToTransfer), outputAS, newID);
}
return;
}
List<Annotation> annots2Move = new ArrayList<Annotation>();
Iterator<Annotation> bodyIter = bodyAnnotations.iterator();
while (bodyIter.hasNext()) {
Annotation bodyAnn = bodyIter.next();
Long start = bodyAnn.getStartNode().getOffset();
Long end = bodyAnn.getEndNode().getOffset();
// get all annotations we want transferred
AnnotationSet annots2Copy = annotsToTransfer.getContained(start, end);
// copy them to the new set and delete them from the old one
annots2Move.addAll(annots2Copy);
}
if (!copyAnnotations) inputAS.removeAll(annots2Move);
transferAnnotations(annots2Move, outputAS, newID);
}