private List<ThesaurusConcept> getRecursiveChildrenByConceptId(
String conceptId, String originalParentId, List<ThesaurusConcept> allRecursiveChildren) {
List<ThesaurusConcept> childrenConcepts =
thesaurusConceptDAO.getChildrenConcepts(conceptId, 0, null);
for (ThesaurusConcept concept : childrenConcepts) {
if (concept.getIdentifier() != originalParentId) {
if (!allRecursiveChildren.contains(concept)) {
allRecursiveChildren.add(concept);
}
getRecursiveChildrenByConceptId(
concept.getIdentifier(), originalParentId, allRecursiveChildren);
}
}
return allRecursiveChildren;
}
@Override
public List<ThesaurusConcept> getAllRootChildren(ThesaurusConcept concept) {
Criteria criteria = getCurrentSession().createCriteria(ThesaurusConcept.class, "tc");
criteria
.createCriteria("tc.rootConcepts", "rc")
.add(Restrictions.eq("rc.identifier", concept.getIdentifier()));
return criteria.list();
}
private ThesaurusConcept saveAssociativeRelationship(
ThesaurusConcept concept, List<AssociativeRelationship> associatedConcepts) {
Set<AssociativeRelationship> relations = new HashSet<AssociativeRelationship>();
if (concept.getAssociativeRelationshipLeft() == null) {
concept.setAssociativeRelationshipLeft(new HashSet<AssociativeRelationship>());
} else {
for (AssociativeRelationship associativeRelationship :
concept.getAssociativeRelationshipLeft()) {
associativeRelationshipDAO.delete(associativeRelationship);
}
}
concept.getAssociativeRelationshipLeft().clear();
if (concept.getAssociativeRelationshipRight() == null) {
concept.setAssociativeRelationshipRight(new HashSet<AssociativeRelationship>());
} else {
for (AssociativeRelationship associativeRelationship :
concept.getAssociativeRelationshipRight()) {
associativeRelationshipDAO.delete(associativeRelationship);
}
}
concept.getAssociativeRelationshipRight().clear();
for (AssociativeRelationship association : associatedConcepts) {
logger.debug("Settings associated concept " + association);
if (association.getIdentifier().getConcept1() == association.getIdentifier().getConcept2()) {
throw new BusinessException(
"It's not possible to make association to itself!", "association-to-itself-error");
}
ThesaurusConcept linkedThesaurusConcept = association.getConceptRight();
if (linkedThesaurusConcept.getStatus() != ConceptStatusEnum.VALIDATED.getStatus()) {
throw new BusinessException(
"A concept must associate a validated concept", "concept-associate-validated-concept");
}
List<String> alreadyAssociatedConcepts =
associativeRelationshipDAO.getAssociatedConcepts(linkedThesaurusConcept);
if (!alreadyAssociatedConcepts.contains(concept.getIdentifier())) {
relations.add(association);
if (association.getRelationshipRole() == null) {
association.setRelationshipRole(new AssociativeRelationshipRole());
}
if (StringUtils.isEmpty(association.getRelationshipRole().getCode())) {
association
.getRelationshipRole()
.setCode(
associativeRelationshipRoleDAO.getDefaultAssociativeRelationshipRole().getCode());
}
}
associativeRelationshipDAO.update(association);
}
concept.getAssociativeRelationshipLeft().addAll(relations);
return concept;
}
@Transactional(readOnly = false)
@Override
public ThesaurusConcept destroyThesaurusConcept(ThesaurusConcept object) {
if (object.getStatus() == ConceptStatusEnum.CANDIDATE.getStatus()
|| object.getStatus() == ConceptStatusEnum.REJECTED.getStatus()) {
List<ThesaurusTerm> terms = thesaurusTermDAO.findTermsByConceptId(object.getIdentifier());
for (ThesaurusTerm term : terms) {
term.setConcept(null);
thesaurusTermDAO.update(term);
}
List<ThesaurusConcept> childrenConcepts =
getChildrenByConceptId(object.getIdentifier(), null);
for (ThesaurusConcept childConcept : childrenConcepts) {
childConcept.getParentConcepts().remove(object);
thesaurusConceptDAO.update(childConcept);
}
List<ThesaurusConcept> rootChildrenConcepts = thesaurusConceptDAO.getAllRootChildren(object);
for (ThesaurusConcept rootChild : rootChildrenConcepts) {
rootChild.getRootConcepts().remove(object);
thesaurusConceptDAO.update(rootChild);
}
List<ThesaurusArray> arrays =
thesaurusArrayDAO.getConceptSuperOrdinateArrays(object.getIdentifier());
for (ThesaurusArray array : arrays) {
thesaurusArrayDAO.delete(array);
}
List<Alignment> alignments = alignmentDAO.findByTargetConceptId(object.getIdentifier());
for (Alignment alignment : alignments) {
if (alignment.getTargetConcepts().size() <= 1) {
alignmentDAO.delete(alignment);
}
}
return thesaurusConceptDAO.delete(object);
} else {
throw new BusinessException(
"It's not possible to delete a concept with a status different from candidate or rejected",
"delete-concept");
}
}
@Override
public String getConceptTitleLanguage(ThesaurusConcept concept) {
return getConceptPreferredTerm(concept.getIdentifier()).getLanguage().getPart1();
}
@Override
public String getConceptTitle(ThesaurusConcept concept) {
return getConceptPreferredTerm(concept.getIdentifier()).getLexicalValue();
}
@Transactional(readOnly = false)
@Override
public ThesaurusConcept updateThesaurusConcept(
ThesaurusConcept object,
List<ThesaurusTerm> terms,
List<AssociativeRelationship> associatedConcepts,
List<ConceptHierarchicalRelationship> hierarchicalRelationships,
List<ThesaurusConcept> childrenConceptToDetach,
List<ThesaurusConcept> childrenConceptToAttach,
List<Alignment> alignments) {
thesaurusTermUtils.checkTerms(terms);
alignmentService.saveExternalThesauruses(alignments);
if (StringUtils.isNotEmpty(object.getIdentifier())) {
List<ThesaurusTerm> existingTerms =
thesaurusTermDAO.findTermsByConceptId(object.getIdentifier());
for (ThesaurusTerm existingTerm : existingTerms) {
if (!terms.contains(existingTerm)) {
ThesaurusTerm term = thesaurusTermDAO.getById(existingTerm.getIdentifier());
term.setConcept(null);
thesaurusTermDAO.update(term);
logger.info("Marking Term with ID " + existingTerm.getIdentifier() + " as SandBoxed.");
}
}
} else {
object.setIdentifier(generatorService.generate(ThesaurusConcept.class));
for (ConceptHierarchicalRelationship hierarchicalRelationship : hierarchicalRelationships) {
hierarchicalRelationship.getIdentifier().setChildconceptid(object.getIdentifier());
}
for (AssociativeRelationship relation : associatedConcepts) {
relation.getIdentifier().setConcept1(object.getIdentifier());
}
}
List<ThesaurusConcept> allRecursiveChild =
getRecursiveChildrenByConceptId(object.getIdentifier());
List<ThesaurusConcept> allRecursiveParents =
getRecursiveParentsByConceptId(object.getIdentifier());
object =
conceptHierarchicalRelationshipServiceUtil.saveHierarchicalRelationship(
object,
hierarchicalRelationships,
allRecursiveParents,
allRecursiveChild,
childrenConceptToDetach,
childrenConceptToAttach);
if (object.getStatus() == ConceptStatusEnum.CANDIDATE.getStatus()) {
// We can set status = candidate only if concept has not relation
// (both hierarchical or associative)
if (!associatedConcepts.isEmpty()
|| !object.getParentConcepts().isEmpty()
|| hasChildren(object.getIdentifier())) {
throw new BusinessException(
"A concept must not have a status candidate when it still have relations",
"concept-status-candidate-relation");
}
}
if (object.getStatus() == ConceptStatusEnum.VALIDATED.getStatus()) {
// Test if parent concepts are validated
Set<ThesaurusConcept> parents = object.getParentConcepts();
for (ThesaurusConcept parent : parents) {
if (parent.getStatus() != ConceptStatusEnum.VALIDATED.getStatus()) {
throw new BusinessException(
"A concept cannot have a parent which status is not validated",
"concept-parent-not-validated");
}
}
}
ThesaurusConcept concept = thesaurusConceptDAO.update(object);
updateConceptTerms(concept, terms);
alignmentService.saveAlignments(concept, alignments);
if (!alignments.isEmpty()) {
alignmentService.deleteExternalThesauruses();
}
return thesaurusConceptDAO.update(saveAssociativeRelationship(concept, associatedConcepts));
}