@Test
public void testSame() throws Exception {
MsMsFile file1 = new Mzid();
MsMsData data1 = file1.load(PATH1, false).markDecoys("decoy");
int spectra1 = data1.getSpectra().size();
int psms1 = data1.getPsms().size();
int peptides1 = data1.getPeptides().size();
int proteins1 = data1.getProteins().size();
logger.info("Data1: " + data1.toString());
MsMsFile file2 = new Mzid();
MsMsData data2 = file2.load(PATH1, false).markDecoys("decoy");
logger.info("Data2: " + data2.toString());
data1.mergeFromPeptide(data2);
int spectraMerge = data1.getSpectra().size();
int psmsMerge = data1.getPsms().size();
int peptidesMerge = data1.getPeptides().size();
int proteinsMerge = data1.getProteins().size();
logger.info("Merge: " + data1.toString());
assertEquals(2 * spectra1, spectraMerge);
assertEquals(2 * psms1, psmsMerge);
assertEquals(peptides1, peptidesMerge);
assertEquals(proteins1, proteinsMerge);
}
@Test
public void testDifferent() throws Exception {
MsMsFile file1 = new Mzid();
MsMsData data1 = file1.load(PATH1, false).markDecoys("decoy");
int spectra1 = data1.getSpectra().size();
int psms1 = data1.getPsms().size();
int peptides1 = data1.getPeptides().size();
int proteins1 = data1.getProteins().size();
logger.info("Data1: " + data1.toString());
MsMsFile file2 = new Mzid();
MsMsData data2 = file2.load(PATH2, false).markDecoys("decoy");
int spectra2 = data2.getSpectra().size();
int psms2 = data2.getPsms().size();
int peptides2 = data2.getPeptides().size();
int proteins2 = data2.getProteins().size();
logger.info("Data2: " + data2.toString());
data1.mergeFromPeptide(data2);
int spectraMerge = data1.getSpectra().size();
int psmsMerge = data1.getPsms().size();
int peptidesMerge = data1.getPeptides().size();
int proteinsMerge = data1.getProteins().size();
logger.info("Merge: " + data1.toString());
assertEquals(spectra1 + spectra2, spectraMerge);
assertEquals(psms1 + psms2, psmsMerge);
assertTrue(
peptidesMerge >= peptides1
&& peptidesMerge >= peptides2
&& peptidesMerge <= (peptides1 + peptides2));
assertTrue(
proteinsMerge >= proteins1
&& proteinsMerge >= proteins2
&& proteinsMerge <= (proteins1 + proteins2));
}