/**
* @see
* edu.wustl.catissuecore.actionForm.AbstractActionForm#setAllValues(edu.wustl.catissuecore.domain.AbstractDomainObject)
* @param abstractDomain An object of Specimen class.
*/
@Override
public void setAllValues(AbstractDomainObject abstractDomain) {
super.setAllValues(abstractDomain);
final CellSpecimenReviewParameters cellSpecimenReviewParametersObject =
(CellSpecimenReviewParameters) abstractDomain;
this.neoplasticCellularityPercentage =
CommonUtilities.toString(
cellSpecimenReviewParametersObject.getNeoplasticCellularityPercentage());
this.viableCellPercentage =
CommonUtilities.toString(cellSpecimenReviewParametersObject.getViableCellPercentage());
}
/**
* Populates all the fields from the domain object to the form bean.
*
* @param abstractDomain An AbstractDomain Object
*/
@Override
public void setAllValues(AbstractDomainObject abstractDomain) {
super.setAllValues(abstractDomain);
final TissueSpecimenReviewEventParameters tissueSpecimenReviewParametersObject =
(TissueSpecimenReviewEventParameters) abstractDomain;
this.neoplasticCellularityPercentage =
CommonUtilities.toString(
tissueSpecimenReviewParametersObject.getNeoplasticCellularityPercentage());
this.necrosisPercentage =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getNecrosisPercentage());
this.lymphocyticPercentage =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getLymphocyticPercentage());
this.totalCellularityPercentage =
CommonUtilities.toString(
tissueSpecimenReviewParametersObject.getTotalCellularityPercentage());
this.histologicalQuality =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getHistologicalQuality());
logger.debug("this.neoplasticCellularityPercentage : " + this.neoplasticCellularityPercentage);
logger.debug("this.necrosisPercentage : " + this.necrosisPercentage);
logger.debug("this.lymphocyticPercentage : " + this.lymphocyticPercentage);
logger.debug("this.totalCellularityPercentage : " + this.totalCellularityPercentage);
}
/**
* @param uiRepOfDomain EventParametersForm.
* @throws AssignDataException AssignDataException.
*/
private void setDateTimeFromCalender(D domainObject, EventParametersForm uiRepOfDomain) {
final Calendar calendar = Calendar.getInstance();
Date date;
try {
date =
CommonUtilities.parseDate(
uiRepOfDomain.getDateOfEvent(),
CommonUtilities.datePattern(uiRepOfDomain.getDateOfEvent()));
calendar.setTime(date);
domainObject.setTimestamp(calendar.getTime());
calendar.set(Calendar.HOUR_OF_DAY, Integer.parseInt(uiRepOfDomain.getTimeInHours()));
calendar.set(Calendar.MINUTE, Integer.parseInt(uiRepOfDomain.getTimeInMinutes()));
domainObject.setTimestamp(calendar.getTime());
} catch (final ParseException excp) {
// TODO
// SpecimenEventParameters.logger.error(excp.getMessage(), excp);
excp.printStackTrace();
// final ErrorKey errorKey =
// ErrorKey.getErrorKey("assign.data.error");
// throw new AssignDataException(errorKey, null,
// "SpecimenEventParameters.java :");
}
}
/**
* Overrides the executeSecureAction method of SecureAction class.
*
* @param mapping object of ActionMapping
* @param form : actionForm
* @param request object of HttpServletRequest
* @param response object of HttpServletResponse
* @throws Exception generic exception
* @return ActionForward : ActionForward
*/
@Override
public ActionForward executeSecureAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
DAO dao = null;
String pageOf = null;
try {
final SessionDataBean sessionDataBean =
(SessionDataBean) request.getSession().getAttribute(Constants.SESSION_DATA);
dao = AppUtility.openDAOSession(sessionDataBean);
final SpecimenArrayAliquotForm specimenArrayAliquotForm = (SpecimenArrayAliquotForm) form;
pageOf = request.getParameter(Constants.PAGE_OF);
final StorageContainerForSpArrayBizLogic bizLogic = new StorageContainerForSpArrayBizLogic();
final SessionDataBean sessionData =
(SessionDataBean) request.getSession().getAttribute(Constants.SESSION_DATA);
final List<NameValueBean> storagePositionListForSpecimenArrayAliquot =
AppUtility.getStoragePositionTypeListForTransferEvent();
request.setAttribute(
"storagePositionListForSpecimenArrayAliquot", storagePositionListForSpecimenArrayAliquot);
final String exceedingMaxLimit = "false";
if (specimenArrayAliquotForm.getButtonClicked().equalsIgnoreCase("submit")) {
final Map tempAliquotMap = new HashMap();
if (specimenArrayAliquotForm.getCheckedButton().equals("1")) {
tempAliquotMap.put("label", specimenArrayAliquotForm.getParentSpecimenArrayLabel());
} else {
tempAliquotMap.put("barcode", specimenArrayAliquotForm.getBarcode());
}
tempAliquotMap.put("aliquotcount", specimenArrayAliquotForm.getAliquotCount());
request.getSession().setAttribute("tempAliquotMap", tempAliquotMap);
} else if (specimenArrayAliquotForm.getButtonClicked().equalsIgnoreCase("create")) {
boolean arePropertiesChanged = false;
final Map tempAliquotMap = (HashMap) request.getSession().getAttribute("tempAliquotMap");
final String label = (String) tempAliquotMap.get("label");
final String barcode = (String) tempAliquotMap.get("barcode");
if (specimenArrayAliquotForm.getCheckedButton().equals("1")) {
if (label == null
|| !label
.trim()
.equalsIgnoreCase(
specimenArrayAliquotForm.getParentSpecimenArrayLabel().trim())) {
arePropertiesChanged = true;
}
} else {
if (barcode == null
|| !barcode.trim().equalsIgnoreCase(specimenArrayAliquotForm.getBarcode().trim())) {
arePropertiesChanged = true;
}
}
final String aliquotcount = (String) tempAliquotMap.get("aliquotcount");
if (!aliquotcount
.trim()
.equalsIgnoreCase(specimenArrayAliquotForm.getAliquotCount().trim())) {
arePropertiesChanged = true;
}
/**
* Repopulate the form with storage container locations in case user has changed any of
* label/barcode, aliquot count, quantity per aliquot.
*/
if (arePropertiesChanged == true) {
specimenArrayAliquotForm.setParentSpecimenArrayLabel(label);
specimenArrayAliquotForm.setAliquotCount(aliquotcount);
specimenArrayAliquotForm.setBarcode(barcode);
ActionErrors errors = this.getActionErrors(request);
if (errors == null) {
errors = new ActionErrors();
}
if (arePropertiesChanged == true) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError("errors.specimenArrayAliquots.reSubmit"));
}
TreeMap containerMap = new TreeMap();
this.checkForSpecimenArray(request, specimenArrayAliquotForm, dao);
// int aliquotCount =
// Integer.parseInt(specimenArrayAliquotForm.getAliquotCount());
final Long id = (Long) request.getAttribute(Constants.STORAGE_TYPE_ID);
containerMap =
bizLogic.getAllocatedContainerMapForSpecimenArray(id.longValue(), sessionData, dao);
this.populateAliquotsStorageLocations(specimenArrayAliquotForm, containerMap);
request.setAttribute(Constants.AVAILABLE_CONTAINER_MAP, containerMap);
request.setAttribute(Constants.PAGE_OF, Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT);
this.saveErrors(request, errors);
return mapping.findForward(Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT);
} else {
// TODO
specimenArrayAliquotForm.setButtonClicked("none");
return mapping.findForward(Constants.COMMON_ADD_EDIT);
}
}
if (Constants.PAGE_OF_SPECIMEN_ARRAY_ALIQUOT_SUMMARY.equals(pageOf)) {
final Map map = (Map) request.getAttribute("forwardToHashMap");
if (map != null) {
// TODO
specimenArrayAliquotForm.setSpecimenClass(
CommonUtilities.toString(map.get(Constants.ALIQUOT_SPECIMEN_CLASS)));
specimenArrayAliquotForm.setSpecimenArrayType(
CommonUtilities.toString(map.get(Constants.ALIQUOT_SPECIMEN_ARRAY_TYPE)));
specimenArrayAliquotForm.setAliquotCount(
CommonUtilities.toString(map.get(Constants.ALIQUOT_ALIQUOT_COUNTS)));
final Collection specimenTypesCollection =
(Collection) map.get(Constants.ALIQUOT_SPECIMEN_TYPES);
final List specimenTypeList =
this.setSpecimenTypes(specimenTypesCollection, specimenArrayAliquotForm);
request.setAttribute(Constants.SPECIMEN_TYPE_LIST, specimenTypeList);
String containerNameKey = "";
String posDim1Key = "";
String posDim2Key = "";
/** This code is added to set storage positions in case of manual mode. bug 15085 */
for (int iCount = 1;
iCount <= Integer.parseInt(specimenArrayAliquotForm.getAliquotCount());
iCount++) {
if (map.get("radio_" + iCount) != null && map.get("radio_" + iCount).equals("2")) {
containerNameKey = "SpecimenArray:" + iCount + "_StorageContainer_name";
posDim1Key = "SpecimenArray:" + iCount + "_positionDimensionOne";
posDim2Key = "SpecimenArray:" + iCount + "_positionDimensionTwo";
map.put(containerNameKey, map.get(containerNameKey + "_fromMap"));
if (!map.get(posDim1Key + "_fromMap").equals("")) {
map.put(posDim1Key, map.get(posDim1Key + "_fromMap"));
}
if (!map.get(posDim2Key + "_fromMap").equals("")) {
map.put(posDim2Key, map.get(posDim2Key + "_fromMap"));
}
}
}
specimenArrayAliquotForm.setSpecimenArrayAliquotMap(map);
}
final ActionErrors errors = this.getActionErrors(request);
if (errors == null || errors.size() == 0) {
final ActionMessages messages = new ActionMessages();
messages.add(ActionMessages.GLOBAL_MESSAGE, new ActionMessage("aliquots.success"));
this.saveMessages(request, messages);
}
return mapping.findForward(pageOf);
}
Map containerMap = new HashMap();
if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(
request.getParameter(Constants.PAGE_OF))) {
pageOf = this.validate(request, specimenArrayAliquotForm);
if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(pageOf)) {
pageOf = this.checkForSpecimenArray(request, specimenArrayAliquotForm, dao);
if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(pageOf)) {
final int aliquotCount = Integer.parseInt(specimenArrayAliquotForm.getAliquotCount());
final Long id = (Long) request.getAttribute(Constants.STORAGE_TYPE_ID);
containerMap =
bizLogic.getAllocatedContainerMapForSpecimenArray(id.longValue(), sessionData, dao);
pageOf = this.checkForSufficientAvailablePositions(request, containerMap, aliquotCount);
if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(pageOf)) {
final ActionErrors errors = (ActionErrors) request.getAttribute(Globals.ERROR_KEY);
if (errors == null || errors.size() == 0) {
this.populateAliquotsStorageLocations(specimenArrayAliquotForm, containerMap);
}
}
}
}
}
request.setAttribute(Constants.EXCEEDS_MAX_LIMIT, exceedingMaxLimit);
request.setAttribute(Constants.AVAILABLE_CONTAINER_MAP, containerMap);
request.setAttribute(Constants.PAGE_OF, pageOf);
} finally {
dao.closeSession();
}
return mapping.findForward(pageOf);
}
