public DomainTableModel(
CyIdentifiable cyId, CDDDomainManager manager, String[] columnNames, String chain) {
this.domainManager = manager;
this.cyId = cyId;
this.chain = chain;
this.svHandler = domainManager.getStructureHandler();
chainTable = (columnNames.length == 4 && svHandler.structureVizAvailable()) ? true : false;
if (!chainTable) {
hits = manager.getHits(cyId);
features = manager.getFeatures(cyId);
this.columnNames = Arrays.copyOf(columnNames, 3);
shown = null;
} else {
hits = manager.getHits(cyId, chain);
features = manager.getFeatures(cyId, chain);
shown = new ArrayList<Boolean>(hits.size() + features.size());
this.columnNames = columnNames;
for (int i = 0; i < (hits.size() + features.size()); i++) shown.add(Boolean.FALSE);
}
}
public void setValueAt(Object value, int rowIndex, int column) {
// System.out.println("SetValue at: "+rowIndex+","+column+" to "+value);
// System.out.println(" current value at: "+rowIndex+","+column+" is "+getValueAt(rowIndex,
// column));
if (column != 3 || !(value instanceof Boolean)) return;
Boolean boolValue = (Boolean) value;
if (shown.get(rowIndex).equals(boolValue)) return;
if (boolValue) {
domainManager.setIgnoreSelection(true);
// System.out.println("Selection ignored");
// Show the structure & select the domain/site
svHandler.openStructure(CyUtils.getName(domainManager.getCurrentNetwork(), cyId), chain);
svHandler.select(chain, (String) getValueAt(rowIndex, 2));
// System.out.println("Selection not ignored");
domainManager.setIgnoreSelection(false);
} else {
domainManager.setIgnoreSelection(true);
// Unselect the domain/site
svHandler.unSelect(chain, (String) getValueAt(rowIndex, 2));
domainManager.setIgnoreSelection(false);
}
shown.set(rowIndex, boolValue);
}