/* (non-Javadoc)
* @see edu.ku.brc.af.ui.forms.validation.TypeSearchForQueryFactory#getDOMFromResource(java.lang.String, java.lang.String)
*/
public Element getDOMFromResource(final String name, final String localPath) {
SpecifyAppContextMgr acMgr = (SpecifyAppContextMgr) AppContextMgr.getInstance();
DataProviderSessionIFace session = null;
try {
session = DataProviderFactory.getInstance().createSession();
String[] dirs = {SpecifyAppContextMgr.COMMONDIR, SpecifyAppContextMgr.BACKSTOPDIR};
for (String dirName : dirs) {
SpAppResourceDir appResDir = acMgr.getSpAppResourceDirByName(dirName);
if (appResDir != null) {
SpAppResource appRes = appResDir.getResourceByName(name);
if (appRes != null) {
session.close();
session = null;
return AppContextMgr.getInstance().getResourceAsDOM(appRes);
}
}
}
} catch (Exception ex) {
ex.printStackTrace();
edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
edu.ku.brc.exceptions.ExceptionTracker.getInstance()
.capture(SpecifyUIFieldFormatterMgr.class, ex);
} finally {
if (session != null) {
session.close();
}
}
return XMLHelper.readDOMFromConfigDir(localPath); // $NON-NLS-1$
}
public SpecifyQueryAdjusterForDomain() {
permsOKForGlobalSearch =
!AppContextMgr.isSecurityOn() || SpecifyUser.isCurrentUserType(UserType.Manager);
// This kicks Global Search into gear if there is just one, but only for that one
// divisionCnt = BasicSQLUtils.getCountAsInt(CNT_TBL_SQL+"division");
// disciplineCnt = BasicSQLUtils.getCountAsInt(CNT_TBL_SQL+"discipline");
// collectionCnt = BasicSQLUtils.getCountAsInt(CNT_TBL_SQL+"collection");
}
/* (non-Javadoc)
* @see edu.ku.brc.af.core.expresssearch.QueryAdjusterForDomain#adjustSQL(java.lang.String, boolean)
*/
@Override
public String adjustSQL(final String sql) {
AppPreferences locPrefs = AppPreferences.getLocalPrefs();
boolean doGlobalSearch =
permsOKForGlobalSearch
&& locPrefs.getBoolean("GLOBAL_SEARCH_AVAIL", false)
&& locPrefs.getBoolean("GLOBAL_SEARCH", false);
// divisionCnt++;
// disciplineCnt++;
// collectionCnt++;
// SpecifyUser should NEVER be null nor the Id !
SpecifyUser user = AppContextMgr.getInstance().getClassObject(SpecifyUser.class);
if (user != null) {
Integer id = user.getId();
if (id != null) {
String adjSQL = sql;
if (StringUtils.contains(adjSQL, SPECIFYUSERID)) {
adjSQL = StringUtils.replace(adjSQL, SPECIFYUSERID, Integer.toString(id));
}
if (StringUtils.contains(adjSQL, DIVID)) {
String adjustedSQL = null;
if (doGlobalSearch || divisionCnt == 1) {
adjustedSQL = removeSpecialFilter(adjSQL, DIVID);
}
if (adjustedSQL == null) {
Integer divId = null;
Division division = AppContextMgr.getInstance().getClassObject(Division.class);
if (division != null) {
divId = division.getId();
} else {
divId =
Agent.getUserAgent().getDivision() != null
? Agent.getUserAgent().getDivision().getDivisionId()
: null;
}
if (divId != null) {
adjSQL = StringUtils.replace(adjSQL, DIVID, Integer.toString(divId));
}
} else {
adjSQL = adjustedSQL;
}
}
// System.out.println(adjSQL);
if (StringUtils.contains(adjSQL, COLMEMID)) {
String adjustedSQL = null;
if (doGlobalSearch || collectionCnt == 1) {
adjustedSQL = removeSpecialFilter(adjSQL, COLMEMID);
}
if (adjustedSQL == null) {
Collection collection = AppContextMgr.getInstance().getClassObject(Collection.class);
if (collection != null) {
adjSQL =
StringUtils.replace(
adjSQL, COLMEMID, Integer.toString(collection.getCollectionId()));
}
} else {
adjSQL = adjustedSQL;
}
}
if (StringUtils.contains(adjSQL, COLLID)) {
String adjustedSQL = null;
if (doGlobalSearch || collectionCnt == 1) {
adjustedSQL = removeSpecialFilter(adjSQL, COLLID);
}
if (adjustedSQL == null) {
Collection collection = AppContextMgr.getInstance().getClassObject(Collection.class);
if (collection != null) {
adjSQL =
StringUtils.replace(
adjSQL, COLLID, Integer.toString(collection.getCollectionId()));
}
} else {
adjSQL = adjustedSQL;
}
}
if (StringUtils.contains(adjSQL, DSPLNID)) {
String adjustedSQL = null;
if (doGlobalSearch || disciplineCnt == 1) {
adjustedSQL = removeSpecialFilter(adjSQL, DSPLNID);
}
if (adjustedSQL == null) {
Discipline discipline = AppContextMgr.getInstance().getClassObject(Discipline.class);
if (discipline != null) {
adjSQL =
StringUtils.replace(
adjSQL, DSPLNID, Integer.toString(discipline.getDisciplineId()));
}
} else {
adjSQL = adjustedSQL;
}
}
if (StringUtils.contains(adjSQL, TAXTREEDEFID)) {
TaxonTreeDef taxonTreeDef =
AppContextMgr.getInstance().getClassObject(TaxonTreeDef.class);
if (taxonTreeDef != null) {
adjSQL =
StringUtils.replace(
adjSQL, TAXTREEDEFID, Integer.toString(taxonTreeDef.getTaxonTreeDefId()));
}
}
if (StringUtils.contains(adjSQL, GTPTREEDEFID)) {
GeologicTimePeriodTreeDef gtpTreeDef =
AppContextMgr.getInstance().getClassObject(GeologicTimePeriodTreeDef.class);
if (gtpTreeDef != null) {
adjSQL =
StringUtils.replace(
adjSQL,
GTPTREEDEFID,
Integer.toString(gtpTreeDef.getGeologicTimePeriodTreeDefId()));
} else {
return null;
}
}
if (StringUtils.contains(adjSQL, STORTREEDEFID)) {
StorageTreeDef locTreeDef =
AppContextMgr.getInstance().getClassObject(StorageTreeDef.class);
if (locTreeDef != null) {
adjSQL =
StringUtils.replace(
adjSQL, STORTREEDEFID, Integer.toString(locTreeDef.getStorageTreeDefId()));
}
}
if (StringUtils.contains(adjSQL, LITHOTREEDEFID)) {
LithoStratTreeDef lithoTreeDef =
AppContextMgr.getInstance().getClassObject(LithoStratTreeDef.class);
if (lithoTreeDef != null) {
adjSQL =
StringUtils.replace(
adjSQL,
LITHOTREEDEFID,
Integer.toString(lithoTreeDef.getLithoStratTreeDefId()));
} else {
return null;
}
}
if (StringUtils.contains(adjSQL, GEOTREEDEFID)) {
GeographyTreeDef lithoTreeDef =
AppContextMgr.getInstance().getClassObject(GeographyTreeDef.class);
if (lithoTreeDef != null) {
adjSQL =
StringUtils.replace(
adjSQL, GEOTREEDEFID, Integer.toString(lithoTreeDef.getGeographyTreeDefId()));
}
}
return adjSQL;
}
throw new RuntimeException("The SpecifyUser ID cannot be null!");
} else {
throw new RuntimeException("The SpecifyUser cannot be null!");
}
}
/**
* Saves an Discipline level XML document to a Database Resource.
*
* @param resName the name of the resource
* @param xml the XML to be saved.
*/
public void saveResource(final String resName, final String xml) {
// System.out.println("Saved");
// System.out.println(xml);
// System.out.println();
SpecifyAppContextMgr acMgr = (SpecifyAppContextMgr) AppContextMgr.getInstance();
DataProviderSessionIFace session = null;
try {
session = DataProviderFactory.getInstance().createSession();
SpAppResource appRes = null;
SpAppResourceDir commonResDir =
acMgr.getSpAppResourceDirByName(SpecifyAppContextMgr.COMMONDIR);
if (commonResDir != null) {
appRes = commonResDir.getResourceByName(resName);
if (appRes == null) {
SpAppResourceDir backStopResDir =
acMgr.getSpAppResourceDirByName(SpecifyAppContextMgr.BACKSTOPDIR);
appRes = backStopResDir.getResourceByName(resName);
if (appRes != null) {
backStopResDir.getSpAppResources().remove(appRes);
commonResDir.getSpAppResources().add(appRes);
appRes.setSpAppResourceDir(commonResDir);
} else {
// major error
UIRegistry.showError("Major Error");
}
}
if (appRes != null) {
session.close();
session = null;
appRes.setDataAsString(xml);
AppContextMgr.getInstance().saveResource(appRes);
} else {
UIRegistry.showError("Major Error #2");
}
}
/*if (appRes == null)
{
SpAppResource backStopDir = acMgr.getSpAppResourceDirByName(BACKSTOPDIR).getResourceByName(resName);
if (appResDir != null)
{
SpAppResource newAppRes = new SpAppResource();
newAppRes.initialize();
if (diskAppRes != null)
{
newAppRes.setMetaData(diskAppRes.getMetaData());
newAppRes.setDescription(diskAppRes.getDescription());
newAppRes.setFileName(diskAppRes.getFileName());
newAppRes.setMimeType(diskAppRes.getMimeType());
newAppRes.setName(diskAppRes.getName());
newAppRes.setLevel(diskAppRes.getLevel());
} else
{
newAppRes.setName(resName);
newAppRes.setLevel((short)0);
newAppRes.setMimeType("text/xml");
}
Agent agent = AppContextMgr.getInstance().getClassObject(Agent.class);
newAppRes.setCreatedByAgent(agent);
newAppRes.setSpecifyUser(user);
newAppRes.setSpAppResourceDir(appResDir);
appResDir.getSpAppResources().add(newAppRes);
newAppRes.setDataAsString(xml);
session.close();
session = null;
((SpecifyAppContextMgr) AppContextMgr.getInstance()).saveResource(newAppRes);
} else
{
AppContextMgr.getInstance().putResourceAsXML(resName, xml); //$NON-NLS-1$
}
}*/
} catch (Exception ex) {
ex.printStackTrace();
edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
edu.ku.brc.exceptions.ExceptionTracker.getInstance()
.capture(SpecifyUIFieldFormatterMgr.class, ex);
} finally {
if (session != null) {
session.close();
}
}
}
protected boolean setup() {
String pathStr =
AppContextMgr.getInstance().getClassObject(Discipline.class) != null
? AppContextMgr.getInstance().getClassObject(Discipline.class).getType()
: ""; //$NON-NLS-1$
pathStr +=
"_"
+ UIHelper.getOSType().toString()
+ "_"
+ (doAll ? "all" : "user"); // $NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$
baseDir = new File(getUserHomeDir() + File.separator + "FormImages"); // $NON-NLS-1$
outputDir = new File(baseDir.getAbsoluteFile() + File.separator + pathStr);
if (!baseDir.exists()) {
if (!baseDir.mkdir()) {
UIRegistry.showError(
String.format(
getResourceString("FormDisplayer.OUTPUT_ERROR"), baseDir.getAbsoluteFile()));
}
}
if (!outputDir.exists()) {
if (!outputDir.mkdir()) {
UIRegistry.showError(
String.format(
getResourceString("FormDisplayer.OUTPUT_ERROR"), outputDir.getAbsoluteFile()));
}
} else {
try {
FileUtils.cleanDirectory(outputDir);
} catch (Exception ex) {
edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(FormDisplayer.class, ex);
ex.printStackTrace();
}
}
String dstDirPath = UIRegistry.getDefaultUserHomeDir() + File.separator + "Specify/site";
try {
File tmplateFile = checkForTemplateFiles(dstDirPath);
mapTemplate = FileUtils.readFileToString(tmplateFile);
mapTemplate =
StringUtils.replace(
mapTemplate,
"Database Schema",
getResourceString("FormDisplayer.FORMS")); // $NON-NLS-1$ //$NON-NLS-2$
} catch (IOException ex) {
ex.printStackTrace();
JOptionPane.showMessageDialog(
null, "You are missing the template that is needed to run this tool.");
return false;
}
if (StringUtils.isEmpty(mapTemplate)) {
System.err.println("The template file is empty!"); // $NON-NLS-1$
}
try {
File srcDir = new File(dstDirPath); // $NON-NLS-1$
for (File f : srcDir.listFiles()) {
if (!f.getName().startsWith(".")) // $NON-NLS-1$
{
File dst =
new File(outputDir.getAbsolutePath() + File.separator + f.getName()); // $NON-NLS-1$
if (!FilenameUtils.getExtension(f.getName()).toLowerCase().equals("html")) // $NON-NLS-1$
{
FileUtils.copyFile(f, dst);
}
dst = new File(baseDir.getAbsolutePath() + File.separator + f.getName()); // $NON-NLS-1$
if (!FilenameUtils.getExtension(f.getName()).toLowerCase().equals("html")) // $NON-NLS-1$
{
FileUtils.copyFile(f, dst);
}
}
}
} catch (Exception ex) {
ex.printStackTrace();
edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(FormDisplayer.class, ex);
ex.printStackTrace();
return false;
}
return true;
}
public void generateFormImages() {
if (setup()) {
createFormImagesIndexFile();
}
int userChoice =
JOptionPane.showConfirmDialog(
getTopWindow(),
getResourceString("FormDisplayer.CHOOSE_VIEWLIST"), // $NON-NLS-1$
getResourceString("FormDisplayer.CHOOSE_VIEWLIST_TITLE"), // $NON-NLS-1$
JOptionPane.YES_NO_OPTION);
doAll = userChoice == JOptionPane.YES_OPTION ? true : false;
if (setup()) {
SpecifyAppContextMgr appContext = (SpecifyAppContextMgr) AppContextMgr.getInstance();
viewList = doAll ? appContext.getEntirelyAllViews() : appContext.getAllViews();
SwingUtilities.invokeLater(
new Runnable() {
/* (non-Javadoc)
* @see java.lang.Runnable#run()
*/
public void run() {
showView();
}
});
}
JButton stopBtn = UIHelper.createButton("Stop Generating Images");
PanelBuilder pb = new PanelBuilder(new FormLayout("p", "p"));
pb.add(stopBtn, (new CellConstraints()).xy(1, 1));
pb.setDefaultDialogBorder();
cancelDlg =
new CustomDialog(
(Frame) null, "Stop Image Generation", false, CustomDialog.OK_BTN, pb.getPanel());
cancelDlg.setOkLabel(getResourceString("CLOSE"));
cancelDlg.setAlwaysOnTop(true);
cancelDlg.setVisible(true);
// Insets screenInsets =
// Toolkit.getDefaultToolkit().getScreenInsets(cancelDlg.getGraphicsConfiguration());;
Rectangle screenRect = cancelDlg.getGraphicsConfiguration().getBounds();
int y = screenRect.height - (cancelDlg.getSize().height * 2);
cancelDlg.setLocation(screenRect.x, y);
stopBtn.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
SwingUtilities.invokeLater(
new Runnable() {
@Override
public void run() {
synchronized (okToProc) {
okToProc.set(false);
viewInx = viewList.size();
}
}
});
}
});
}
@Transient
@Override
protected TaxonTreeDef getCurrentTreeDef() {
return (TaxonTreeDef)
((SpecifyAppContextMgr) AppContextMgr.getInstance()).getTreeDefForClass(Taxon.class);
}