public static String determineFileType(FileMetadata fm) throws IOException {
// TODO: networkDataFile
StudyFile sf = fm.getStudyFile();
if (sf instanceof TabularDataFile) {
return determineTabularDataFileType((TabularDataFile) sf);
} else {
if (sf.isRemote()) {
return FileUtil.determineFileType(fm.getLabel());
} else {
return FileUtil.determineFileType(new File(sf.getFileSystemLocation()), fm.getLabel());
}
}
}
public void remove(Long id) {
VDCUser user = (VDCUser) em.find(VDCUser.class, id);
if (user != null) {
// Need to remove this user from other collections it may belong to.
for (Iterator it = user.getUserGroups().iterator(); it.hasNext(); ) {
UserGroup group = (UserGroup) it.next();
group.getUsers().remove(user);
}
for (Iterator it2 = user.getStudies().iterator(); it2.hasNext(); ) {
Study study = (Study) it2.next();
study.getAllowedUsers().remove(user);
}
for (Iterator it2 = user.getStudyFiles().iterator(); it2.hasNext(); ) {
StudyFile studyFile = (StudyFile) it2.next();
studyFile.getAllowedUsers().remove(user);
}
for (Iterator it = user.getAllowedFileVdcs().iterator(); it.hasNext(); ) {
VDC elem = (VDC) it.next();
elem.getAllowedFileUsers().remove(user);
}
em.remove(user);
}
}
public static String getUserFriendlyOriginalType(StudyFile sf) {
String originalType = sf.getOriginalFileType();
if (!StringUtil.isEmpty(originalType)) {
if (originalType.indexOf(";") != -1) {
originalType = originalType.substring(0, originalType.indexOf(";"));
}
try {
return ResourceBundle.getBundle("FileTypeBundle").getString(originalType);
} catch (MissingResourceException e) {
return originalType;
}
}
return originalType;
}
public static String getUserFriendlyFileType(StudyFile sf) {
String tempFileType = sf.getFileType();
if (tempFileType != null) {
if (tempFileType.indexOf(";") != -1) {
tempFileType = tempFileType.substring(0, tempFileType.indexOf(";"));
}
try {
return ResourceBundle.getBundle("FileTypeBundle").getString(tempFileType);
} catch (MissingResourceException e) {
return tempFileType;
}
}
return tempFileType;
}
private boolean isUserAuthorizedForNonRolePage(
PageDef pageDef, HttpServletRequest request, LoginBean loginBean, UserGroup ipUserGroup) {
VDCUser user = null;
if (loginBean != null) {
user = loginBean.getUser();
}
if (user != null
&& user.getNetworkRole() != null
&& user.getNetworkRole().getName().equals(NetworkRoleServiceLocal.ADMIN)) {
// If you are network admin, you can do anything!
return true;
}
VDC currentVDC = vdcService.getVDCFromRequest(request);
if (currentVDC != null && !isTermsOfUsePage(pageDef) && isVdcRestricted(pageDef, request)) {
if (currentVDC.isVDCRestrictedForUser(user, ipUserGroup)) {
return false;
}
} else if (pageDef != null
&& (pageDef.getName().equals(PageDefServiceLocal.DV_OPTIONS_PAGE)
|| pageDef.getName().equals(PageDefServiceLocal.ACCOUNT_OPTIONS_PAGE)
|| pageDef.getName().equals(PageDefServiceLocal.ACCOUNT_PAGE)
|| pageDef.getName().equals(PageDefServiceLocal.MANAGE_STUDIES_PAGE))) {
// For these pages, the only requirement is
// to be logged in.
if (user == null) {
return false;
}
String userParam = request.getParameter("userId");
if (userParam != null && !userParam.equals(user.getId().toString())) {
// To view other users, logged in user must be an admin or curator
if (!(user.isAdmin(currentVDC) || user.isCurator(currentVDC))) {
return false;
}
}
} else if (isViewStudyPage(pageDef)) {
Study study = null;
StudyVersion studyVersion = null;
String studyId = VDCBaseBean.getParamFromRequestOrComponent("studyId", request);
String versionNumber = VDCBaseBean.getParamFromRequestOrComponent("versionNumber", request);
if (studyId != null) {
study = studyService.getStudy(Long.parseLong(studyId));
if (versionNumber != null) {
studyVersion =
studyService.getStudyVersion(Long.parseLong(studyId), new Long(versionNumber));
}
} else {
study =
studyService.getStudyByGlobalId(
VDCBaseBean.getParamFromRequestOrComponent("globalId", request));
}
if (study.isStudyRestrictedForUser(user, ipUserGroup)) {
return false;
}
if (studyVersion != null) {
// If study has been deaccessioned,
// only show the page if the user is authorized to edit
if (study.isDeaccessioned() && (user == null || !study.isUserAuthorizedToEdit(user))) {
return false;
}
// If this is a draft version, only show the version if the user is authorized to edit
if (studyVersion.isWorkingCopy() && (user == null || !study.isUserAuthorizedToEdit(user))) {
return false;
}
}
} else if (isVersionDiffPage(pageDef)) {
Study study = null;
StudyVersion studyVersion1 = null;
StudyVersion studyVersion2 = null;
String studyId = VDCBaseBean.getParamFromRequestOrComponent("studyId", request);
Long[] versionList = VDCRequestBean.parseVersionNumberList(request);
studyVersion1 = studyService.getStudyVersion(Long.parseLong(studyId), versionList[0]);
studyVersion2 = studyService.getStudyVersion(Long.parseLong(studyId), versionList[1]);
if (studyId != null) {
study = studyService.getStudy(Long.parseLong(studyId));
} else {
study =
studyService.getStudyByGlobalId(
VDCBaseBean.getParamFromRequestOrComponent("globalId", request));
}
if (study.isStudyRestrictedForUser(user, ipUserGroup)) {
return false;
}
// If study has been deaccessioned,
// only show the page if the user is authorized to edit
if (study.isDeaccessioned() && (user == null || !study.isUserAuthorizedToEdit(user))) {
return false;
}
// If this is a draft version, only show the version if the user is authorized to edit
if ((studyVersion1.isWorkingCopy() || studyVersion2.isWorkingCopy())
&& (user == null || !study.isUserAuthorizedToEdit(user))) {
return false;
}
if ("confirmRelease".equals(request.getParameter("actionMode"))
&& !study.isUserAuthorizedToRelease(user)) {
return false;
}
} else if (isSubsettingPage(pageDef)) {
String dtId = VDCBaseBean.getParamFromRequestOrComponent("dtId", request);
DataTable dataTable = variableService.getDataTable(Long.parseLong(dtId));
Study study = dataTable.getStudyFile().getStudy();
if (study.isStudyRestrictedForUser(user, ipUserGroup)) {
return false;
}
} else if (isExploreDataPage(pageDef)) {
String fileId = VDCBaseBean.getParamFromRequestOrComponent("fileId", request);
StudyFile sf = studyFileService.getStudyFile(Long.parseLong(fileId));
if (sf.isFileRestrictedForUser(user, currentVDC, ipUserGroup)) {
return false;
}
} else if (isEditAccountPage(pageDef)) {
String userId = VDCBaseBean.getParamFromRequestOrComponent("userId", request);
if (user == null || user.getId() != Long.parseLong(userId)) {
return false;
}
} else if (isManifestPage(pageDef)) {
LockssConfig chkLockssConfig = getLockssConfig(currentVDC);
if (chkLockssConfig == null) {
return false;
} else if (chkLockssConfig.getserverAccess().equals(ServerAccess.GROUP)) {
VDCRole userRole = null;
String userVDCRoleName = null;
if (user != null && currentVDC != null) {
userRole = loginBean.getVDCRole(currentVDC);
}
if (user != null && userRole != null && user.isAdmin(currentVDC)) {
return true;
}
if (user != null
&& user.getNetworkRole() != null
&& user.getNetworkRole().getName().equals(NetworkRoleServiceLocal.ADMIN)) {
// If you are network admin, you can do anything!
return true;
}
if (!lockssAuth.isAuthorizedLockssServer(currentVDC, request)) {
return false;
}
}
}
return true;
}