@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
DoubleParameter quantileP =
new DoubleParameter(QUANTILE_ID, 0.1) //
.addConstraint(CommonConstraints.GREATER_EQUAL_ZERO_DOUBLE) //
.addConstraint(CommonConstraints.LESS_EQUAL_ONE_DOUBLE);
if (config.grab(quantileP)) {
quantile = quantileP.doubleValue();
}
DoubleParameter samplingP =
new DoubleParameter(SAMPLING_ID) //
.addConstraint(CommonConstraints.GREATER_THAN_ZERO_DOUBLE);
if (config.grab(samplingP)) {
sampling = samplingP.doubleValue();
}
Flag nozerosF = new Flag(NOZEROS_ID);
if (config.grab(nozerosF)) {
nozeros = nozerosF.isTrue();
}
RandomParameter randP = new RandomParameter(SEED_ID);
if (config.grab(randP)) {
rand = randP.getValue();
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
FileParameter fileP = new FileParameter(FILE_ID, FileParameter.FileType.INPUT_FILE);
if (config.grab(fileP)) {
file = fileP.getValue();
}
PatternParameter idP = new PatternParameter(ID_ID, ID_PATTERN_DEFAULT);
if (config.grab(idP)) {
idpattern = idP.getValue();
}
PatternParameter scoreP = new PatternParameter(SCORE_ID);
if (config.grab(scoreP)) {
scorepattern = scoreP.getValue();
}
Flag inverstedF = new Flag(INVERTED_ID);
if (config.grab(inverstedF)) {
inverted = inverstedF.getValue();
}
ObjectParameter<ScalingFunction> scalingP =
new ObjectParameter<>(SCALING_ID, ScalingFunction.class, IdentityScaling.class);
if (config.grab(scalingP)) {
scaling = scalingP.instantiateClass(config);
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
ObjectParameter<EarthModel> modelP =
new ObjectParameter<>(
EarthModel.MODEL_ID, EarthModel.class, SphericalVincentyEarthModel.class);
if (config.grab(modelP)) {
model = modelP.instantiateClass(config);
}
ObjectParameter<IndexFactory<O, ?>> innerP =
new ObjectParameter<>(
ProjectedIndex.Factory.Parameterizer.INDEX_ID, IndexFactory.class);
if (config.grab(innerP)) {
inner = innerP.instantiateClass(config);
}
Flag materializeF = new Flag(ProjectedIndex.Factory.Parameterizer.MATERIALIZE_FLAG);
if (config.grab(materializeF)) {
materialize = materializeF.isTrue();
}
Flag norefineF = new Flag(ProjectedIndex.Factory.Parameterizer.DISABLE_REFINE_FLAG);
if (config.grab(norefineF)) {
norefine = norefineF.isTrue();
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
ObjectParameter<NumberVectorDistanceFunction<?>> distanceFunctionP =
new ObjectParameter<>(
EvaluateSilhouette.Parameterizer.DISTANCE_ID,
NumberVectorDistanceFunction.class,
EuclideanDistanceFunction.class);
if (config.grab(distanceFunctionP)) {
distance = distanceFunctionP.instantiateClass(config);
}
EnumParameter<NoiseHandling> noiseP =
new EnumParameter<NoiseHandling>(
EvaluateSilhouette.Parameterizer.NOISE_ID,
NoiseHandling.class,
NoiseHandling.TREAT_NOISE_AS_SINGLETONS);
if (config.grab(noiseP)) {
noiseOption = noiseP.getValue();
}
if (noiseOption == NoiseHandling.IGNORE_NOISE) {
Flag penalizeP = new Flag(EvaluateSilhouette.Parameterizer.NO_PENALIZE_ID);
if (config.grab(penalizeP)) {
penalize = penalizeP.isFalse();
}
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
PatternParameter positiveClassNameP = new PatternParameter(POSITIVE_CLASS_NAME_ID);
positiveClassNameP.setOptional(true);
if (config.grab(positiveClassNameP)) {
positiveClassName = positiveClassNameP.getValue();
}
IntParameter binsP = new IntParameter(BINS_ID, 50);
binsP.addConstraint(CommonConstraints.GREATER_THAN_ONE_INT);
if (config.grab(binsP)) {
bins = binsP.getValue();
}
ObjectParameter<ScalingFunction> scalingP =
new ObjectParameter<>(SCALING_ID, ScalingFunction.class, IdentityScaling.class);
if (config.grab(scalingP)) {
scaling = scalingP.instantiateClass(config);
}
Flag splitfreqF = new Flag(SPLITFREQ_ID);
if (config.grab(splitfreqF)) {
splitfreq = splitfreqF.getValue();
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
final Flag flag = new Flag(INVERT_ID);
if (config.grab(flag)) {
invert = flag.getValue();
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
{
DoubleParameter param =
new DoubleParameter(ALPHA_ID, 0.2) //
.addConstraint(CommonConstraints.GREATER_EQUAL_ZERO_DOUBLE) //
.addConstraint(CommonConstraints.LESS_EQUAL_ONE_DOUBLE);
if (config.grab(param)) {
alpha = param.getValue();
}
}
{
DoubleParameter param =
new DoubleParameter(BETA_ID, 0.8) //
.addConstraint(CommonConstraints.GREATER_THAN_ZERO_DOUBLE) //
.addConstraint(CommonConstraints.LESS_THAN_ONE_DOUBLE);
if (config.grab(param)) {
beta = param.getValue();
}
}
{
DoubleParameter param =
new DoubleParameter(W_ID, 0.05) //
.addConstraint(CommonConstraints.GREATER_EQUAL_ZERO_DOUBLE);
if (config.grab(param)) {
w = param.getValue();
}
}
{
Flag param = new Flag(HEURISTICS_ID);
if (config.grab(param)) {
heuristics = param.getValue();
}
}
if (heuristics) {
IntParameter param =
new IntParameter(D_ZERO_ID, 5) //
.addConstraint(CommonConstraints.GREATER_EQUAL_ONE_INT);
if (config.grab(param)) {
d_zero = param.getValue();
}
}
{
RandomParameter param = new RandomParameter(RANDOM_ID);
if (config.grab(param)) {
random = param.getValue();
}
}
}
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
ObjectParameter<ClusteringAlgorithm<?>> referencealgP =
new ObjectParameter<>(
REFERENCE_ID, ClusteringAlgorithm.class, ByLabelOrAllInOneClustering.class);
if (config.grab(referencealgP)) {
referencealg = referencealgP.instantiateClass(config);
}
Flag noiseSpecialHandlingF = new Flag(NOISE_ID);
if (config.grab(noiseSpecialHandlingF)) {
noiseSpecialHandling = noiseSpecialHandlingF.getValue();
}
Flag selfPairingF = new Flag(SELFPAIR_ID);
if (config.grab(selfPairingF)) {
selfPairing = selfPairingF.getValue();
}
}