@SuppressWarnings("unchecked")
@Override
public void actionPerformed(ActionEvent ae) {
String action = ae.getActionCommand();
LinkTriple[] addNodes = null;
if (action.equals("Fetch")) {
addNodes = iSparql.ExploreURI(urlText.getText());
addLinks(addNodes);
// Cytoscape.getCurrentNetwork().addNode( Cytoscape.getCyNode( urlText.getText(), true ) );
}
if (action.equals("Fetch Selected")) {
CyNetwork network = Cytoscape.getCurrentNetwork();
Set nodeset = network.getSelectedNodes();
java.util.List<LinkTriple> nodeList = new LinkedList<LinkTriple>();
for (Object o : nodeset) {
CyNode node = (CyNode) o;
for (LinkTriple newNode : iSparql.ExploreURI(node.getIdentifier())) {
nodeList.add(newNode);
}
}
if (filterCheckbox.getState())
addLinks(iSparql.NodeFilter(null, nodeList.toArray(new LinkTriple[0])));
else addLinks(nodeList.toArray(new LinkTriple[0]));
}
if (action.equals("Find Nodes")) {
CyAttributes nodeAttr = Cytoscape.getNodeAttributes();
CyNetwork network = Cytoscape.getCurrentNetwork();
Set nodeset = network.getSelectedNodes();
java.util.List<Map<String, Object>> nodeList = new LinkedList<Map<String, Object>>();
for (Object o : nodeset) {
CyNode node = (CyNode) o;
Map<String, Object> map = new HashMap<String, Object>();
String id = node.getIdentifier();
map.put("ID", id);
for (String attr : nodeAttr.getAttributeNames()) {
if (nodeAttr.hasAttribute(id, attr)) {
System.out.println(id + " " + attr + " " + nodeAttr.getType(attr));
if (nodeAttr.getType(attr) == CyAttributes.TYPE_STRING) {
Object iAttr = nodeAttr.getAttribute(id, attr);
map.put(attr, iAttr);
}
}
}
nodeList.add(map);
}
LinkTriple[] links = iSparql.NodeSearch(null, nodeList, "ID");
addLinks(links);
}
if (action.equals("Edit Namespaces")) {
Map<String, String> nameMap = prefs.getNameSpaces();
Map<String, String> newMap = NameSpaceEditor.EditDialog(nameMap);
for (String key : nameMap.keySet()) {
prefs.removeNameSpace(key);
}
for (String key : newMap.keySet()) {
prefs.addNameSpace(key, newMap.get(key));
}
}
}
