@Test
public final void testSearch() throws IOException {
SimpleIOHandler reader = new SimpleIOHandler();
Model model =
reader.convertFromOWL(
resourceLoader.getResource("classpath:merge/pathwaydata1.owl").getInputStream());
SearchEngine searchEngine = new SearchEngine(model, indexLocation);
searchEngine.index();
assertTrue(new File(indexLocation).exists());
SearchResponse response = searchEngine.search("ATP", 0, null, null, null);
assertNotNull(response);
assertFalse(response.isEmpty());
assertEquals(7, response.getSearchHit().size());
assertEquals(7, response.getNumHits().intValue());
CPathSettings.getInstance().setDebugEnabled(false);
response = searchEngine.search("ATP", 0, Interaction.class, null, null);
assertNotNull(response);
assertFalse(response.isEmpty());
assertEquals(2, response.getSearchHit().size());
// if cPath2 debugging is disabled, - no score/explain in the excerpt
assertFalse(response.getSearchHit().get(0).getExcerpt().contains("-SCORE-"));
// enable cPath2 debugging...
CPathSettings.getInstance().setDebugEnabled(true);
response = searchEngine.search("ATP", 0, Pathway.class, null, null);
assertNotNull(response);
assertFalse(response.isEmpty());
assertEquals(1, response.getSearchHit().size());
SearchHit hit = response.getSearchHit().get(0);
assertEquals(4, hit.getSize().intValue()); // no. member processes, not counting the hit itself
assertTrue(hit.getExcerpt().contains("-SCORE-"));
CPathSettings.getInstance().setDebugEnabled(false);
// test a special implementation for wildcard queries
response = searchEngine.search("*", 0, Pathway.class, null, null);
assertNotNull(response);
assertFalse(response.isEmpty());
assertEquals(1, response.getSearchHit().size());
// find all objects (this here works with page=0 as long as the
// total no. objects in the test model < max hits per page)
response = searchEngine.search("*", 0, null, null, null);
assertEquals(50, response.getSearchHit().size());
response = searchEngine.search("*", 0, PhysicalEntity.class, null, null);
assertEquals(8, response.getSearchHit().size());
response = searchEngine.search("*", 0, PhysicalEntity.class, null, new String[] {"562"});
assertEquals(2, response.getSearchHit().size());
response =
searchEngine.search("*", 0, PhysicalEntity.class, null, new String[] {"Escherichia"});
assertFalse(response.isEmpty());
assertEquals(2, response.getSearchHit().size());
response =
searchEngine.search("*", 0, PhysicalEntity.class, null, new String[] {"Escherichia coliü"});
assertFalse(response.isEmpty());
assertEquals(2, response.getSearchHit().size());
response = searchEngine.search("*", 0, Provenance.class, null, null);
assertEquals(2, response.getSearchHit().size());
response = searchEngine.search("*", 0, Provenance.class, new String[] {"kegg"}, null);
assertEquals(1, response.getSearchHit().size());
// datasource filter using a URI (required for -update-counts console command and
// datasources.html page to work)
response =
searchEngine.search(
"*", 0, Pathway.class, new String[] {"http://identifiers.org/kegg.pathway/"}, null);
assertFalse(response.isEmpty());
assertEquals(1, response.getSearchHit().size());
response =
searchEngine.search("pathway:glycolysis", 0, SmallMoleculeReference.class, null, null);
assertEquals(5, response.getSearchHit().size());
// test search with pagination
searchEngine.setMaxHitsPerPage(10);
response = searchEngine.search("*", 0, null, null, null);
assertEquals(0, response.getPageNo().intValue());
assertEquals(50, response.getNumHits().intValue());
assertEquals(10, response.getSearchHit().size());
response = searchEngine.search("*", 1, null, null, null);
assertEquals(10, response.getSearchHit().size());
assertEquals(1, response.getPageNo().intValue());
}
/*
* Makes current cpath2 instance properties
* available to the JSP views.
* @return
*/
@ModelAttribute("cpath")
public CPathSettings instance() {
return CPathSettings.getInstance();
}