/**
* @param diseaseHyp haploid disease hypothesis that starts with NONE and includes rest of
* nucleotides (see <code>HypothesesDisease</code>).
* @param genome selects family member with father starting at 0.
* @return true iff the disease hypothesis is consistent with the disease status of this family
* member (aka genome). Assumes disease is dominant.
*/
private boolean q(final int diseaseHyp, final int genome) {
final int hyp = mCurrentHypotheses[genome];
final boolean contains;
final Code code = mIndividualHypotheses.code();
final int dis = diseaseHyp - 1;
// TODO implement recessive version controlled by flag.
if (code.homozygous(hyp)) {
contains = code.a(hyp) == dis;
} else {
contains = code.a(hyp) == dis || code.b(hyp) == dis;
}
return contains == mFamily.isDiseased(genome);
}
