/**
* Converts a form definition object to XHTML.
*
* @param formDef the form definition object.
* @return the xhtml.
*/
public static String fromFormDef2Xhtml(FormDef formDef) {
Document doc = fromFormDef2XhtmlDoc(formDef);
formDef.setDoc(doc);
formDef.setXformsNode(doc.getDocumentElement());
if (FormUtil.isJavaRosaSaveFormat()) ItextBuilder.build(formDef);
return XmlUtil.fromDoc2String(doc);
}
protected void readModel(Model aModel) throws Exception {
Element el =
DATAMODEL_TAG_NAME.equals(doc.getDocumentElement().getNodeName())
? doc.getDocumentElement()
: Utils.getElementByTagName(doc.getDocumentElement(), DATAMODEL_TAG_NAME);
if (el != null && aModel != null) {
model = aModel;
try {
currentTag = el;
NodeList nl = currentTag.getChildNodes();
if (nl != null && nl.getLength() > 0) {
Element lcurrentTag = currentTag;
try {
for (int i = 0; i < nl.getLength(); i++) {
if (ENTITY_TAG_NAME.equals(nl.item(i).getNodeName())) {
currentTag = (Element) nl.item(i);
Entity entity = new Entity();
entity.accept(this);
} else if (RELATION_TAG_NAME.equals(nl.item(i).getNodeName())) {
currentTag = (Element) nl.item(i);
Relation relation = new Relation();
relation.accept(this);
} else if (REFERENCE_RELATION_TAG_NAME.equals(nl.item(i).getNodeName())) {
currentTag = (Element) nl.item(i);
Relation relation = new ReferenceRelation();
relation.accept(this);
}
}
} finally {
currentTag = lcurrentTag;
}
}
model.validateQueries();
for (Runnable resolver : relationsResolvers) {
resolver.run();
}
model.checkRelationsIntegrity();
} finally {
relationsResolvers = null;
model = null;
}
}
}
public void loadQueryDef(String xml) {
Document doc = XMLParser.parse(xml);
Element rootNode = doc.getDocumentElement();
if (!rootNode.getNodeName().equalsIgnoreCase(XmlBuilder.NODE_NAME_QUERYDEF)) return;
HashMap<String, DisplayColumnWidget> displayCols = new HashMap<String, DisplayColumnWidget>();
NodeList nodes = rootNode.getElementsByTagName(XmlBuilder.NODE_NAME_DISPLAY_FIELDS);
if (nodes != null && nodes.getLength() > 0)
loadDisplayFields((Element) nodes.item(0), displayCols);
nodes = rootNode.getElementsByTagName(XmlBuilder.NODE_NAME_SORT_FIELDS);
if (nodes != null && nodes.getLength() > 0)
loadSortFields((Element) nodes.item(0), displayCols);
}
public void setState(String state) {
// read in this pedigree from the xml
Vector<PelicanPerson> newPedigree = new Vector<PelicanPerson>();
int pedSize = 0;
Vector<Integer> pidList = new Vector<Integer>();
Vector<Integer> midList = new Vector<Integer>();
HashMap<Integer, Integer> idMap = new HashMap<Integer, Integer>();
Document doc = XMLParser.parse(state);
NodeList people = doc.getDocumentElement().getChildNodes();
for (int i = 0; i < people.getLength(); i++) {
Element e = (Element) people.item(i);
if (e.getTagName().equals("Person")) {
int id = Integer.parseInt(e.getAttribute("Id"));
int sex = Integer.parseInt(e.getAttribute("Sex"));
int affection = Integer.parseInt(e.getAttribute("Affection"));
String[] genotype = new String[2];
genotype[0] = "?";
genotype[1] = "?";
PelicanPerson person =
new PelicanPerson(this, id, null, null, sex, affection, "", 0, genotype);
newPedigree.add(person);
int father = Integer.parseInt(e.getAttribute("Father"));
pidList.add(new Integer(father));
int mother = Integer.parseInt(e.getAttribute("Mother"));
midList.add(new Integer(mother));
idMap.put(new Integer(id), new Integer(pedSize++));
}
}
for (int i = 0; i < newPedigree.size(); i++) {
PelicanPerson person = (PelicanPerson) newPedigree.elementAt(i);
// gww if (((Integer)pidList.elementAt(i)).intValue()!=PelicanPerson.unknown) {
if ((Integer) pidList.elementAt(i) != PelicanPerson.unknownID) {
if (!idMap.containsKey(pidList.elementAt(i)))
// gww throw(new Error("Father of subject "+String.valueOf(person.id)+" is
// missing"));
throw (new Error("Father of subject " + person.id + " is missing"));
person.father =
(PelicanPerson)
newPedigree.elementAt(((Integer) idMap.get(pidList.elementAt(i))).intValue());
}
// gww if (((Integer)midList.elementAt(i)).intValue()!=PelicanPerson.unknown) {
if ((Integer) midList.elementAt(i) != PelicanPerson.unknownID) {
if (!idMap.containsKey(midList.elementAt(i)))
// gww throw(new Error("Mother of subject "+String.valueOf(person.id)+" is
// missing"));
throw (new Error("Mother of subject " + person.id + " is missing"));
person.mother =
(PelicanPerson)
newPedigree.elementAt(((Integer) idMap.get(midList.elementAt(i))).intValue());
}
}
// figure out the generations
((PelicanPerson) newPedigree.elementAt(0)).laidOut = true;
boolean someChange = true;
int nperson = newPedigree.size();
// repeatedly pass through the pedigree all subjects laid out
while (someChange) {
someChange = false;
for (int i = 0; i < nperson; i++) {
PelicanPerson p = (PelicanPerson) newPedigree.elementAt(i);
if (!p.laidOut) {
// try to get it from the parents
for (int j = 0; j < nperson; j++) {
PelicanPerson parent = (PelicanPerson) newPedigree.elementAt(j);
if (parent == p.father && parent.laidOut) {
p.generation = parent.generation + 1;
p.laidOut = true;
someChange = true;
}
if (parent == p.mother && parent.laidOut) {
p.generation = parent.generation + 1;
p.laidOut = true;
someChange = true;
}
}
}
if (p.laidOut) {
// assign parents generation
for (int j = 0; j < nperson; j++) {
PelicanPerson parent = (PelicanPerson) newPedigree.elementAt(j);
if (parent == p.father && !parent.laidOut) {
parent.generation = p.generation - 1;
parent.laidOut = true;
someChange = true;
}
if (parent == p.mother && !parent.laidOut) {
parent.generation = p.generation - 1;
parent.laidOut = true;
someChange = true;
}
}
}
}
}
if (!checkIntegrity(newPedigree).equals("")) {
return;
}
// end
clear();
currentId = 0;
for (int i = 0; i < nperson; i++) {
PelicanPerson p = (PelicanPerson) newPedigree.elementAt(i);
add(p);
// gww need to add in check for valid integer ID else ignore updating of currentId
if (p.id > 0) {
// gww if (i==0 || p.id>currentId) currentId=p.id;
if (i == 0 || p.id > currentId) currentId = p.id;
}
}
currentId++;
newPedigree.removeAllElements();
updateDisplay();
}
