public Polymer(JSONObject jsonObject) {
super(SchemaClass.POLYMER, jsonObject);
if (jsonObject.containsKey("maxUnitCount")) {
this.maxUnitCount = FactoryUtils.getIntValue(jsonObject, "maxUnitCount");
}
if (jsonObject.containsKey("minUnitCount")) {
this.minUnitCount = FactoryUtils.getIntValue(jsonObject, "minUnitCount");
}
if (jsonObject.containsKey("totalProt")) {
this.totalProt = FactoryUtils.getStringValue(jsonObject, "totalProt");
}
if (jsonObject.containsKey("maxHomologues")) {
this.maxHomologues = FactoryUtils.getStringValue(jsonObject, "maxHomologues");
}
if (jsonObject.containsKey("inferredProt")) {
this.inferredProt = FactoryUtils.getStringValue(jsonObject, "inferredProt");
}
for (JSONObject object : FactoryUtils.getObjectList(jsonObject, "repeatedUnit")) {
this.repeatedUnits.add((PhysicalEntity) ModelFactory.getDatabaseObject(object));
}
}
@Override
public void onResponseReceived(Request request, Response response) {
JSONValue j = JSONParser.parseStrict(response.getText());
JSONObject obj = j.isObject();
if (obj != null && obj.containsKey("error")) {
Window.alert(obj.get("error").isString().stringValue());
changeButtonSelection();
setTextEnabled(false);
clearTextBoxes();
singleSelectionModel.clear();
} else {
List<OrganismInfo> organismInfoList =
OrganismInfoConverter.convertJSONStringToOrganismInfoList(response.getText());
dataGrid.setSelectionModel(singleSelectionModel);
MainPanel.getInstance().getOrganismInfoList().clear();
MainPanel.getInstance().getOrganismInfoList().addAll(organismInfoList);
changeButtonSelection();
OrganismChangeEvent organismChangeEvent = new OrganismChangeEvent(organismInfoList);
organismChangeEvent.setAction(OrganismChangeEvent.Action.LOADED_ORGANISMS);
Annotator.eventBus.fireEvent(organismChangeEvent);
// in the case where we just add one . . .we should refresh the app state
if (organismInfoList.size() == 1) {
MainPanel.getInstance().getAppState();
}
}
if (savingNewOrganism) {
savingNewOrganism = false;
setNoSelection();
changeButtonSelection(false);
loadingDialog.hide();
}
}
/**
* 入力されたメッセージを元に、宛先とコマンドを変更したものを返す
*
* @deprecated 0.7.4 親子関係を組み込むと、callの部分がmanualに成る為、使用不可とする。
* @param receiverName
* @param command
* @param eventString
* @return
*/
public String copyOut(
int messageCategoly, String newReceiverName, String newCommand, String eventString) {
// 内容チェックを行い、receiverとcommandを書き換える
debug.assertTrue(newReceiverName != null, "newReceiverName = null");
debug.assertTrue(newCommand != null, "newCommand = null");
debug.assertTrue(eventString != null, "eventString = null");
JSONObject eventObj = JSONParser.parseStrict(eventString).isObject();
debug.assertTrue(
eventObj.containsKey(KEY_MESSAGE_CATEGOLY), "not contain KEY_MESSAGE_CATEGOLY");
debug.assertTrue(eventObj.containsKey(KEY_MESSENGER_NAME), "not contain KEY_MESSENGER_NAME");
debug.assertTrue(eventObj.containsKey(KEY_MESSENGER_ID), "not contain KEY_MESSENGER_ID");
debug.assertTrue(eventObj.containsKey(KEY_MESSENGER_EXEC), "not contain KEY_MESSENGER_EXEC");
debug.assertTrue(eventObj.containsKey(KEY_TO_NAME), "not contain KEY_TO_NAME");
debug.assertTrue(eventObj.containsKey(KEY_TO_ID), "not contain KEY_TO_ID");
debug.assertTrue(
eventObj.containsKey(KEY_MESSENGER_TAGVALUE_GROUP),
"not contain KEY_MESSENGER_TAGVALUE_GROUP");
// categolyの書き換えを行う
return replaceSenderInformation(
messageCategoly, getName(), getID(), newReceiverName, newCommand, eventObj)
.toString();
}
public void onJsonReceived(JSONValue jsonValue) {
JSONObject jsonObject = jsonValue.isObject();
if (jsonObject == null) {
return;
}
if (jsonObject.containsKey("serverTime"))
lastSyncDate.put(gameId, (long) jsonObject.get("serverTime").isNumber().doubleValue());
if (jsonObject.get("error") != null) {
Authentication.getInstance().disAuthenticate();
} else {
onJsonArrayReceived(jsonObject);
}
}
@Override
public void buildWidget(JSONObject jsonObj, Widget parent) {
VkMenuBarHorizontal tree = (VkMenuBarHorizontal) parent;
addAttributes(jsonObj, parent);
JSONArray items = jsonObj.get("items").isArray();
for (int i = 0; i < items.size(); i++) {
JSONObject item = items.get(i).isObject();
JSONValue js = item.get("js");
if (js != null)
((VkMenuBarHorizontalEngine)
VkStateHelper.getInstance()
.getWidgetEngineMapping()
.getEngineMap()
.get(((IVkWidget) tree).getWidgetName()))
.addMenuItem(
tree,
item.get("html").isString().stringValue(),
item.get("js").isString().stringValue());
else if (item.containsKey("child")) {
JSONObject childObj = item.get("child").isObject();
JSONString widgetName = childObj.get("widgetName").isString();
Widget widget = VkStateHelper.getInstance().getEngine().getWidget(widgetName.stringValue());
VkStateHelper.getInstance().getEngine().addWidget(widget, ((IVkPanel) tree));
VkStateHelper.getInstance()
.getWidgetEngineMapping()
.getEngineMap()
.get(((IVkWidget) widget).getWidgetName())
.buildWidget(childObj, widget);
// addAttributes(childObj, widget);
} else if (item.get("separator") == null) {
VkMenuBarHorizontal subTree =
(VkMenuBarHorizontal)
VkStateHelper.getInstance()
.getEngine()
.getWidget(VkMenuBarVertical.NAME); // all submenus are vertical
// addAttributes(item.get("menu").isObject(), subTree);
tree.addItem(new MenuItem(item.get("html").isString().stringValue(), subTree));
VkStateHelper.getInstance()
.getWidgetEngineMapping()
.getEngineMap()
.get(((IVkWidget) tree).getWidgetName())
.buildWidget(item.get("menu").isObject(), subTree);
} else addSeparator(tree);
}
}
private void printGitMessage(String messageText, GitOutputConsole console) {
if (messageText == null || messageText.isEmpty()) {
return;
}
JSONObject jsonObject = JSONParser.parseStrict(messageText).isObject();
if (jsonObject == null) {
return;
}
String message = "";
if (jsonObject.containsKey("message")) {
message = jsonObject.get("message").isString().stringValue();
}
console.print("");
String[] lines = message.split("\n");
for (String line : lines) {
console.printError(line);
}
}
private void fromJson(final JSONValue data) {
try {
if (null != data) {
restoreddata = data.isObject();
final String version = restoreddata.get("historyversion").isString().stringValue();
if (!version.equals(SearchPanelModel.historyversion)) {
throw new Exception("versionstring of search history has changed, need to reset history");
}
final String selectedtype = restoreddata.get("selectedtype").isString().stringValue();
final Iterator<String> iter = criteria.keySet().iterator();
while (iter.hasNext()) {
final String searchTypeDisplayKey = iter.next();
if (!restoreddata.containsKey(
criteria.get(searchTypeDisplayKey).values().iterator().next().type)) {
searchhistory.put(searchTypeDisplayKey, new SearchHistory());
searchhistory.get(searchTypeDisplayKey).setLimit(SearchPanelModel.SEARCH_HISTORY_LIMIT);
accesshistory.put(searchTypeDisplayKey, new AccessHistory());
accesshistory.get(searchTypeDisplayKey).setLimit(SearchPanelModel.ACCESS_HISTORY_LIMIT);
continue;
}
final String type = criteria.get(searchTypeDisplayKey).values().iterator().next().type;
final JSONObject searchdata = restoreddata.get(type.toLowerCase()).isObject();
final JSONObject userdata =
searchdata.get(Context.get().getChallengeLogin().toLowerCase()).isObject();
final Criterion criterion =
criteria
.get(searchTypeDisplayKey)
.get(userdata.get("selectedcriterion").isString().stringValue());
if (criterion.displaytype.equalsIgnoreCase(selectedtype)) {
selectedCriterion = criterion;
}
selectedCriterionHistory.put(criterion.displaytype, criterion);
final JSONObject criteriadata = userdata.get("criteria").isObject();
for (final String key : criteriadata.keySet()) {
criteria
.get(criterion.displaytype)
.get(key)
.setHistory(criteriadata.get(key).isObject());
}
if (userdata.containsKey("searchhistory")) {
searchhistory.put(
searchTypeDisplayKey,
SearchHistory.Reader.read(userdata.get("searchhistory").isObject()));
} else {
searchhistory.put(searchTypeDisplayKey, new SearchHistory());
searchhistory.get(searchTypeDisplayKey).setLimit(SearchPanelModel.SEARCH_HISTORY_LIMIT);
}
if (userdata.containsKey("accesshistory")) {
accesshistory.put(
searchTypeDisplayKey,
AccessHistory.Reader.read(userdata.get("accesshistory").isObject()));
} else {
accesshistory.put(searchTypeDisplayKey, new AccessHistory());
accesshistory.get(searchTypeDisplayKey).setLimit(SearchPanelModel.ACCESS_HISTORY_LIMIT);
}
}
}
} catch (final Exception e) {
getLogger().severe("SearchModel.fromJson() : " + e);
reset();
}
}
/**
* バリューをタグから取得する 存在しない場合アサーションエラー
*
* @param message
* @param tag
* @return
*/
public JSONValue getValueForTag(String tag, String message) {
JSONObject obj = getJSONObjetFromMessage(message);
debug.assertTrue(obj.containsKey(tag), "no- " + tag + " -contains");
return obj.get(tag);
}
public DownloadLocation(JSONObject object) {
String key = null;
key = "name";
if (object.containsKey(key))
if (object.get(key).isString() != null) setName(object.get(key).isString().stringValue());
key = "annotations";
if (object.containsKey(key))
if (object.get(key).isString() != null)
setAnnotations(object.get(key).isString().stringValue());
key = "id";
if (object.containsKey(key))
if (object.get(key).isString() != null) setId(object.get(key).isString().stringValue());
key = "type";
if (object.containsKey(key))
if (object.get(key).isString() != null) setType(object.get(key).isString().stringValue());
key = "path";
if (object.containsKey(key))
if (object.get(key).isString() != null) setPath(object.get(key).isString().stringValue());
key = "creationDate";
if (object.containsKey(key))
if (object.get(key).isNumber() != null)
setCreationDate(new Date(new Double(object.get(key).isNumber().doubleValue()).longValue()));
key = "parentId";
if (object.containsKey(key))
if (object.get(key).isString() != null) setParentId(object.get(key).isString().stringValue());
key = "etag";
if (object.containsKey(key))
if (object.get(key).isString() != null) setEtag(object.get(key).isString().stringValue());
key = "md5sum";
if (object.containsKey(key))
if (object.get(key).isString() != null) setMd5sum(object.get(key).isString().stringValue());
key = "uri";
if (object.containsKey(key))
if (object.get(key).isString() != null) setUri(object.get(key).isString().stringValue());
key = "accessControlList";
if (object.containsKey(key))
if (object.get(key).isString() != null)
setAccessControlList(object.get(key).isString().stringValue());
key = "contentType";
if (object.containsKey(key))
if (object.get(key).isString() != null)
setContentType(object.get(key).isString().stringValue());
}
/**
* Default constructor.
*
* @param json the id of the default view.
*/
public StreamListFormElement(final JSONObject json) {
scopes =
new StreamScopeFormElement(
"scopes",
new LinkedList<StreamScope>(),
"",
"Enter the name of an employee or group.",
false,
true,
"/resources/autocomplete/entities/",
MAX_NAME,
MAX_ITEMS);
this.addStyleName(StaticResourceBundle.INSTANCE.coreCss().streamLists());
label.addStyleName(StaticResourceBundle.INSTANCE.coreCss().formLabel());
this.add(label);
this.add(streamOptions);
streamOptions.addItem("Everyone", "");
streamOptions.addItem("Following", StreamJsonRequestFactory.FOLLOWED_BY_KEY);
streamOptions.addItem("Saved", StreamJsonRequestFactory.SAVED_KEY);
streamOptions.addItem("Groups I've Joined", StreamJsonRequestFactory.JOINED_GROUPS_KEY);
streamOptions.addItem("Posted To", StreamJsonRequestFactory.RECIPIENT_KEY);
streamOptions.addItem("Authored By", StreamJsonRequestFactory.AUTHOR_KEY);
streamOptions.addItem("Liked By", StreamJsonRequestFactory.LIKER_KEY);
streamOptions.addChangeHandler(
new ChangeHandler() {
public void onChange(final ChangeEvent event) {
scopes.setVisible(hasStreamScopes(getSelected()));
}
});
if (json == null) {
streamOptions.setSelectedIndex(0);
scopes.setVisible(false);
} else {
if (json.containsKey(StreamJsonRequestFactory.RECIPIENT_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.RECIPIENT_KEY);
} else if (json.containsKey(StreamJsonRequestFactory.SAVED_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.SAVED_KEY);
} else if (json.containsKey(StreamJsonRequestFactory.PARENT_ORG_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.PARENT_ORG_KEY);
} else if (json.containsKey(StreamJsonRequestFactory.FOLLOWED_BY_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.FOLLOWED_BY_KEY);
} else if (json.containsKey(StreamJsonRequestFactory.AUTHOR_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.AUTHOR_KEY);
} else if (json.containsKey(StreamJsonRequestFactory.LIKER_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.LIKER_KEY);
} else if (json.containsKey(StreamJsonRequestFactory.JOINED_GROUPS_KEY)) {
setSelectedByValue(StreamJsonRequestFactory.JOINED_GROUPS_KEY);
} else {
setSelectedByValue("");
}
if (hasStreamScopes(getSelected())) {
Session.getInstance()
.getEventBus()
.addObserver(
GotBulkEntityResponseEvent.class,
new Observer<GotBulkEntityResponseEvent>() {
public void update(final GotBulkEntityResponseEvent event) {
JSONArray recipientArray = json.get(getSelected()).isArray();
for (int i = 0; i < recipientArray.size(); i++) {
JSONObject recipient = (JSONObject) recipientArray.get(i);
String uniqueId =
recipient
.get(StreamJsonRequestFactory.ENTITY_UNIQUE_ID_KEY)
.isString()
.stringValue();
String displayName =
getEntityDisplayName(
EntityType.valueOf(
recipient
.get(StreamJsonRequestFactory.ENTITY_TYPE_KEY)
.isString()
.stringValue()),
uniqueId,
event.getResponse());
ScopeType scopeType =
ScopeType.valueOf(
recipient
.get(StreamJsonRequestFactory.ENTITY_TYPE_KEY)
.isString()
.stringValue());
StreamScope scope = new StreamScope(scopeType, uniqueId);
scope.setDisplayName(displayName);
Session.getInstance()
.getEventBus()
.notifyObservers(new StreamScopeAddedEvent(scope));
}
Session.getInstance()
.getEventBus()
.removeObserver(GotBulkEntityResponseEvent.class, this);
}
});
ArrayList<StreamEntityDTO> entities = new ArrayList<StreamEntityDTO>();
JSONArray recipientArray = json.get(getSelected()).isArray();
for (int i = 0; i < recipientArray.size(); i++) {
JSONObject recipient = (JSONObject) recipientArray.get(i);
StreamEntityDTO entity = new StreamEntityDTO();
entity.setType(
EntityType.valueOf(
recipient
.get(StreamJsonRequestFactory.ENTITY_TYPE_KEY)
.isString()
.stringValue()));
entity.setUniqueIdentifier(
recipient
.get(StreamJsonRequestFactory.ENTITY_UNIQUE_ID_KEY)
.isString()
.stringValue());
entities.add(entity);
}
BulkEntityModel.getInstance().fetch(entities, false);
}
}
this.add(scopes);
}
