@Test
public void testTable() {
HashBasedTable<Integer, Integer, Integer> table = HashBasedTable.create();
table.put(1, 1, 1);
table.put(1, 2, 2);
table.put(1, 3, 3);
table.put(2, 1, 4);
table.put(2, 2, 5);
table.put(2, 3, 6);
assert table.containsRow(1);
assert table.containsColumn(2);
assert table.row(1).get(3) == 3;
}
@Test
public void testHashBasedTable() {
HashBasedTable<Integer, Integer, String> table = HashBasedTable.create();
for (int row = 0; row < 5; row++) {
for (int column = 0; column < 10; column++) {
table.put(row, column, row + "_" + column);
}
}
System.out.println(table.rowMap().toString());
}
private void handleIncomingConfirmableCoapRequest(ChannelHandlerContext ctx, MessageEvent me) {
InetSocketAddress remoteEndpoint = (InetSocketAddress) me.getRemoteAddress();
CoapMessage coapMessage = (CoapMessage) me.getMessage();
IncomingReliableMessageExchange newMessageExchange =
new IncomingReliableMessageExchange(remoteEndpoint, coapMessage.getMessageID());
IncomingMessageExchange oldMessageExchange =
ongoingMessageExchanges.get(remoteEndpoint, coapMessage.getMessageID());
// Check if there is an ongoing
if (oldMessageExchange != null) {
if (oldMessageExchange instanceof IncomingReliableMessageExchange) {
// if the old message exchange is reliable and the empty ACK was already sent send another
// empty ACK
if (((IncomingReliableMessageExchange) oldMessageExchange).isAcknowledgementSent())
writeEmptyAcknowledgement(remoteEndpoint, coapMessage.getMessageID());
}
// if the old message was unreliable and the duplicate message is confirmable send empty ACK
else writeEmptyAcknowledgement(remoteEndpoint, coapMessage.getMessageID());
// As the message is already being processed there is nothing more to do
return;
}
// try to add new reliable message exchange
boolean added = false;
synchronized (monitor) {
Long time = System.currentTimeMillis() + MIN_EMPTY_ACK_DELAY_MILLIS;
// Add message exchange to set of ongoing exchanges to detect duplicates
if (!ongoingMessageExchanges.contains(remoteEndpoint, coapMessage.getMessageID())) {
ongoingMessageExchanges.put(remoteEndpoint, coapMessage.getMessageID(), newMessageExchange);
added = true;
}
// If the scheduling of the empty ACK does not work then it was already scheduled
if (!emptyAcknowledgementSchedule.put(time, newMessageExchange)) {
log.error("Could not schedule empty ACK for message: {}", coapMessage);
ongoingMessageExchanges.remove(remoteEndpoint, coapMessage.getMessageID());
added = false;
}
}
// everything is fine, so further process message
if (added) ctx.sendUpstream(me);
}
/**
* Filter out any employees in this Supervisor emp group that are not under this supervisor during
* the given dateRange.
*
* @param dateRange Range<LocalDate>
*/
public void filterActiveEmployeesByDate(Range<LocalDate> dateRange) {
this.setPrimaryEmployees(
this.getPrimaryEmployees()
.values()
.stream()
.filter(supInfo -> isSupInfoInRange(supInfo, dateRange))
.collect(Collectors.toMap(EmployeeSupInfo::getEmpId, Function.identity())));
this.setOverrideEmployees(
this.getOverrideEmployees()
.values()
.stream()
.filter(supInfo -> isSupInfoInRange(supInfo, dateRange))
.collect(Collectors.toMap(EmployeeSupInfo::getEmpId, Function.identity())));
HashBasedTable<Integer, Integer, EmployeeSupInfo> filteredSupOverrideEmps =
HashBasedTable.create();
this.supOverrideEmployees
.values()
.stream()
.filter(supInfo -> isSupInfoInRange(supInfo, dateRange))
.forEach(
supInfo ->
filteredSupOverrideEmps.put(supInfo.getSupId(), supInfo.getEmpId(), supInfo));
this.supOverrideEmployees = filteredSupOverrideEmps;
}
private void handleIncomingNonConfirmableMessage(ChannelHandlerContext ctx, MessageEvent me) {
InetSocketAddress remoteEndpoint = (InetSocketAddress) me.getRemoteAddress();
CoapMessage coapMessage = (CoapMessage) me.getMessage();
boolean isDuplicate = true;
if (!ongoingMessageExchanges.contains(remoteEndpoint, coapMessage.getMessageID())) {
IncomingMessageExchange messageExchange =
new IncomingMessageExchange(remoteEndpoint, coapMessage.getMessageID());
synchronized (monitor) {
if (!ongoingMessageExchanges.contains(remoteEndpoint, coapMessage.getMessageID())) {
ongoingMessageExchanges.put(remoteEndpoint, coapMessage.getMessageID(), messageExchange);
isDuplicate = false;
}
}
ctx.sendUpstream(me);
}
if (isDuplicate)
log.info("Received duplicate (non-confirmable). IGNORE! (Message: {})", coapMessage);
}
private void initialize() {
// ert1 = earth geometry object
// dThreshold = threshold distance
// ranDist = distances range
// ranTime = time range
// ranDirect = directions range
// i1 = counter
// rgdSum = row sums
double dThreshold;
EarthGeometry ert1;
Range<Double> ranDist;
Range<Double> ranTime;
Range<Double> ranDirect;
int i1;
double rgdSum[];
// initializing mocked data
rgdLat = new double[] {45., 46., 47., 48.};
rgdLon = new double[] {-110., -109., -108., -107.};
rgdPoints = new double[rgdLat.length * rgdLat.length][2];
i1 = 0;
for (int i = 0; i < rgdLat.length; i++) {
for (int j = 0; j < rgdLat.length; j++) {
rgdPoints[i1][0] = rgdLat[i];
rgdPoints[i1][1] = rgdLon[j];
i1++;
}
}
rgdAbund = new double[2][rgdPoints.length];
tblWeight = HashBasedTable.create(4, 4);
dThreshold = 150.;
ert1 = new EarthGeometry();
rgdSum = new double[rgdPoints.length];
for (int i = 0; i < rgdPoints.length; i++) {
for (int j = 0; j < rgdPoints.length; j++) {
if (i != j
&& ert1.orthodromicDistanceWGS84(
rgdPoints[i][0], rgdPoints[i][1], rgdPoints[j][0], rgdPoints[j][1])
< dThreshold) {
tblWeight.put(i, j, 1.);
rgdSum[i] += 1.;
} else {
tblWeight.put(i, j, 0.);
}
}
rgdAbund[0][i] = ((double) i) / 20.;
rgdAbund[1][i] = (((double) i) % 4.) / 4.;
}
for (int i = 0; i < rgdPoints.length; i++) {
for (int j = 0; j < rgdPoints.length; j++) {
if (rgdSum[i] > 0) {
tblWeight.put(i, j, tblWeight.get(i, j) / rgdSum[i]);
}
}
}
// loading spatial weights object from file
ranDist = Range.closed(0., dThreshold);
ranTime = Range.closed(0., 12.);
ranDirect = Range.closed(0., 360.);
bio1 =
new BiomIO(
"/home/jladau/Desktop/Data/Microbial_Community_Samples/ValidationData.NA.NA.Ladau.biom");
try {
spw1 =
new SpatialWeightsMatrix(
bio1, ranDist, ranDirect, ranTime, "binary", "latitude-longitude", false);
} catch (Exception e) {
e.printStackTrace();
}
}
public void addCrossFeature(int i, int j, String f) {
if (!crossFactors.contains(i, j)) {
crossFactors.put(i, j, new Factor());
}
crossFactors.get(i, j).add(f);
}
