@BeforeClass
public static void before() throws Exception {
conn = getTestConn("MongoTest");
// write one test document into Mongo
JCas jCas = UimaTests.getTokenizedTestCas();
BiolexiconDictTerm b = new BiolexiconDictTerm(jCas, 0, 11);
b.setEntityId("theId");
b.addToIndexes();
Header h = new Header(jCas);
h.setDocId("17");
h.addToIndexes();
JcasPipelineBuilder p = new JcasPipelineBuilder(jCas);
p.add(MongoWriter.class, BlueUima.PARAM_DB_CONNECTION, conn);
p.process();
}
@Test
public void testRead() throws Exception {
// read
List<JCas> l =
asList(createReader(MongoCollectionReader.class, BlueUima.PARAM_DB_CONNECTION, conn));
assertEquals(1, l.size());
JCas jCas = l.get(0);
assertEquals(UimaTests.TEST_SENTENCE, jCas.getDocumentText());
for (Annotation a : JCasUtil.select(jCas, Annotation.class)) {
System.out.println(a);
}
BiolexiconDictTerm b = selectSingle(jCas, BiolexiconDictTerm.class);
assertNotNull(b);
assertEquals("theId", b.getEntityId());
Header h = selectSingle(jCas, Header.class);
assertNotNull(h);
assertEquals("17", h.getDocId());
}