@Test
public void testGeneratedXsd() throws SAXException, IOException, HL7Exception {
InputStream xsdInputStream = XsdConfGenMojo.class.getResourceAsStream("/XSDGEN.xsd");
Validate.notNull(xsdInputStream);
Source xsdSource = new StreamSource(xsdInputStream);
Validate.notNull(xsdSource);
// InputStream xsdXsdInputStream =
// XsdConfGenMojo.class.getResourceAsStream("/XMLSchema.xsd");
// Validate.notNull(xsdXsdInputStream);
//
// StreamSource xsdXsdSource = new StreamSource(xsdXsdInputStream);
// Validate.notNull(xsdXsdSource);
SchemaFactory schemaFactory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
Schema schema = schemaFactory.newSchema(xsdSource);
Validator validator = schema.newValidator();
DefaultHapiContext ctx = new DefaultHapiContext(new ValidationContextImpl());
ADT_A01 a01 = new ADT_A01();
a01.initQuickstart("ADT", "A01", "T");
a01.setParser(ctx.getXMLParser());
try {
validator.validate(new StreamSource(new StringReader(a01.encode())));
fail();
} catch (SAXParseException e) {
// expected
}
populateFully(a01);
ourLog.info("Message:\n{}", ctx.getPipeParser().encode(a01).replace('\r', '\n'));
validator.validate(new StreamSource(new StringReader(a01.encode())));
}
private Message doProcess(Message theArg0) throws HL7Exception, ApplicationException {
String encodedMessage = theArg0.encode();
Terser terser = new Terser(theArg0);
String msgType = terser.get("/MSH-9-1");
String msgTrigger = terser.get("/MSH-9-2");
MSH msh = (MSH) theArg0.get("MSH");
ourLog.info("Message is of type " + msgType + "^" + msgTrigger);
List<Failure> failures;
try {
String msgSourceOrg = terser.get("/MSH-3-1");
String sourceOrg =
myContributorConfig.getContributorConfig().getNameOfHspId9004(msgSourceOrg);
ourLog.info("Sending organization from message is {} - {}", msgSourceOrg, sourceOrg);
} catch (Exception e) {
// ignore
}
Converter converter;
try {
converter = new Converter(true);
} catch (JAXBException e2) {
ourLog.error("Failed to convert message: Could not initialize converter", e2);
throw new HL7Exception(e2);
}
String outcome = null;
if ("ORU".equals(msgType) && "R01".equals(msgTrigger)) {
final ORU_R01 oru = (ORU_R01) theArg0;
final List<ClinicalDocumentGroup> documents = converter.convertClinicalDocument(oru);
try {
outcome =
"ORU^R01 message evaluated (containing " + documents.size() + " documents/results)";
// outcome = Persister.persist(documents);
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else if ("ADT".equals(msgType)) {
ADT_A01 adt = new ADT_A01();
adt.setParser(myParser);
adt.parse(encodedMessage);
PatientWithVisits pwv = converter.convertPatientWithVisits(adt);
try {
if (pwv != null) {
outcome = "ADT^" + msgTrigger + " message evaluated";
// outcome = Persister.persist(pwv);
} else {
outcome = PROCESSING_FAILED_OUTCOME;
}
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else if ("RDE".equals(msgType) && "O11".equals(msgTrigger)) {
RDE_O11 rde = new RDE_O11();
rde.setParser(myParser);
rde.parse(encodedMessage);
List<MedicationOrder> medOrders = converter.convertMedicationOrder(rde);
try {
outcome =
"RDE^O11 message evaluated (containing " + medOrders.size() + " medication orders)";
// outcome = Persister.persistMedicationOrders(medOrders);
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else if ("RAS".equals(msgType) && "O17".equals(msgTrigger)) {
RAS_O17 ras = new RAS_O17();
ras.setParser(myParser);
ras.parse(encodedMessage);
List<MedicationOrderWithAdmins> medOrdersWithAdmins = converter.convertMedicationAdmin(ras);
try {
outcome =
"RAS^O17 message evaluated (containing administration data for "
+ medOrdersWithAdmins.size()
+ " medication orders)";
// outcome = Persister.persistMedicationAdmins(medOrdersWithAdmins);
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else {
/*
* Note: If adding processors for additional message types, make
* sure to update the description for F098!!
*/
converter.validateMsh(msh);
converter.addFailure("/MSH-9", FailureCode.F098, msgType + "^" + msgTrigger);
outcome = PROCESSING_FAILED_OUTCOME;
}
if (StringUtils.isBlank(outcome)) {
outcome = PROCESSING_FAILED_OUTCOME;
}
// These are determined from the IDs in the message
SendingSystem sendingSystem = converter.getSendingSystem();
Contributor contributor = converter.getContributorConfig();
// if (contributor == null) {
// contributor = myContributor;
// } else if (contributor != myContributor) {
// converter.addFailure("MSH-3-1", FailureCode.F112,
// msh.getMsh3_SendingApplication().getHd1_NamespaceID().getValue());
// contributor = myContributor;
// }
if (sendingSystem == null) {
throw new ApplicationException(
"Failed to determine sender from message. Please check MSH-3 value");
}
// if (sendingSystem == null ||
// contributor.getSendingSystem9008WithOid(sendingSystem.getCode()) == null) {
// converter.addFailure("MSH-3-2", FailureCode.F113,
// msh.getMsh3_SendingApplication().getHd2_UniversalID().getValue());
// sendingSystem = contributor.getSendingSystem().get(0);
// ourLog.info("Defaulting to first sending system {} because MSH-3-2 was {}",
// sendingSystem.getDescription(),
// msh.getMsh3_SendingApplication().getHd2_UniversalID().getValue());
// }
ourLog.info(
"Converted message from {} - {}", contributor.getName(), sendingSystem.getDescription());
String orgId = sendingSystem.getManagementConsoleOrgId();
if (StringUtils.isBlank(orgId)) {
orgId = contributor.getManagementConsoleOrgId();
}
final CanonicalHl7V2Message canon =
AbstractPojo.createNewCanonicalMessageHl7V2(
encodedMessage,
orgId,
sendingSystem.getManagementConsoleSystemId(),
Listener.INTERFACE_ID,
MessagePhase.INCOMING,
Listener.class,
java.util.logging.Logger.getLogger(Listener.class.getName()));
failures = converter.getFailures();
if (failures.size() > 0) {
String problemDescription = createHtmlProblemDescription(converter);
if (problemDescription.length() > 0) {
canon.setValidationOutcomeDescription(problemDescription);
}
ourLog.info("Message has {} failures", converter.getFailures().size());
} else {
ourLog.info("Message has no validation failures! Outstanding.");
canon.setValidationOutcomeDescription("No issues");
}
if (outcome != null) {
canon.setValidationOutcomeDescription(
canon.getValidationOutcomeDescription() + "<br>Outcome: " + outcome);
} else {
canon.setValidationOutcomeDescription(canon.getValidationOutcomeDescription());
}
// Journal for the source
ourLog.info("Journalling message");
final JournalMessageRequest request = new JournalMessageRequest();
request.setCanonicalHl7V2Message(canon);
try {
AbstractPojo.tryToJournalMessage(myJournalSvc, request);
} catch (InvalidInputException e) {
ourLog.error("Failed to send message to journal", e);
throw new HL7Exception("Failed to process message");
} catch (final sail.wsdl.infrastructure.journalling.UnexpectedErrorException e) {
ourLog.error("Failed to send message to dead letter", e);
throw new HL7Exception("Failed to process message");
} catch (Exception e) {
ourLog.error("Failed to journal message. Moving on", e);
StringWriter w = new StringWriter();
JAXB.marshal(request, w);
ourLog.error("Request was: " + w.toString());
}
// // Journal again for the destination
// canon.setDestination(new OutboundInterface());
// canon.getDestination().setBoxId(canon.getSource().getBoxId());
// canon.getDestination().setDomainId(canon.getSource().getDomainId());
// canon.getDestination().setInterfaceDirection("O");
// canon.getDestination().setOrgId("SIMS");
// canon.getDestination().setSystemId("CGTA_Interim_CDR");
// canon.getDestination().setInterfaceId("All");
// canon.setCurrentMessagePhase(MessagePhase.OUTGOING);
// try {
// myJournalSvc.journalMessage(request);
// } catch (final InvalidInputException e) {
// ourLog.error("Failed to send message to journal", e);
// } catch (final
// sail.wsdl.infrastructure.journalling.UnexpectedErrorException e)
// {
// ourLog.error("Failed to send message to dead letter", e);
// }
try {
ACK ack = (ACK) theArg0.generateACK();
for (final Failure next : converter.getFailures()) {
ERR err = ack.getERR(ack.getERRReps());
err.getErr1_ErrorCodeAndLocation(0).getEld1_SegmentID().setValue(next.getTerserPath());
err.getErr3_HL7ErrorCode().getCwe1_Identifier().setValue(next.getFailureCode().name());
err.getErr6_ApplicationErrorParameter(0).setValue(next.getFieldVal());
err.getErr7_DiagnosticInformation().setValue(next.getMessage());
}
return ack;
} catch (final IOException e) {
throw new HL7Exception(e);
}
}