private String getAdjustInfoSelectionString(String key, AdjustSelectionInfo asi)
throws StarBiochemException {
String aisStr = ""; // $NON-NLS-1$
if ((null != key) && (null != asi) && (null != asi.getSelections())) {
if (key.equals(CenterHeteroSelectionRaiser.class.getName())) {
aisStr = ViewerRenderHetero.getAdjustHeteroFilteredSelectionScript(asi, viewer);
} else if (key.equals(CenterNucleicRaiser.class.getName())) {
aisStr = ViewerRenderNucleic.getAdjustNucleicFilteredSelectionsScript(asi, viewer);
} else if (key.equals(CenterProteinPrimaryRaiser.class.getName())) {
aisStr =
ViewerRenderProteinPrimaryStructure.getAdjustProteinPrimaryFilteredSelectionScript(
asi, viewer);
} else if (key.equals(CenterProteinSecondaryRaiser.class.getName())) {
aisStr =
ViewerRenderProteinSecondaryStructure.getAdjustProteinSecondaryFilteredSelectionScript(
asi);
} else if (key.equals(CenterProteinTertiaryRaiser.class.getName())) {
aisStr =
ViewerRenderProteinTertiaryStructure.getAdjustProteinTertiarySelection(asi, viewer);
} else if (key.equals(CenterProteinQuaternaryRaiser.class.getName())) {
aisStr =
ViewerRenderProteinQuaternaryStructure.getAdjustProteinQuatenaryFilteredSelectionScript(
asi);
} else if (key.equals(CenterWaterSelectionRaiser.class.getName())) {
aisStr = ViewerRenderWater.getAdjustWaterFilteredSelectionScript(asi, viewer);
}
}
return aisStr;
}
@Handles(raises = {})
protected void handleRenderingInfoRaiser(final RenderingInfoRaiser raiser) {
final RenderingInfo ri = raiser.getRenderingInfo();
final MoleculeJmolContainer self = this;
if (null != ri) {
StarBiochemMain.setGlassPaneVisible(true);
try {
if (RenderingInfoRaiser.PROTEIN_PRIMARY_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinPrimaryStructure.renderProteinPrimaryStructure(viewer, ri);
}
if (RenderingInfoRaiser.PROTEIN_PRIMARY_COVALENT_BONDS.equals(ri.getSource())) {
ViewerRenderProteinPrimaryStructure.renderProteinPrimaryCovalentBonds(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_SECONDARY_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinSecondaryStructure.renderProteinSecondaryStructure(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_SECONDARY_HBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinSecondaryStructure.renderProteinSecondaryHBondStructure(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_TERTIARY_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinTertiaryStructure.renderProteinTertiaryStructure(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_TERTIARY_COVALENT_BONDS.equals(ri.getSource())) {
ViewerRenderProteinTertiaryStructure.renderProteinTertiaryCovalentBonds(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_TERTIARY_HBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinTertiaryStructure.renderProteinTertiaryHbonds(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_QUATERNARY_STRUCTURE.equals(ri.getSource())) {
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
try {
ViewerRenderProteinQuaternaryStructure.renderProteinQuaternaryStructure(
viewer, ri);
} catch (StarBiochemException e1) {
closeException = e1;
self.raise_CloseMoleculeEvent();
}
}
});
} else if (RenderingInfoRaiser.PROTEIN_QUATERNARY_SSBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinQuaternaryStructure.renderProteinQuaternarySSBonds(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_QUATERNARY_HBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderProteinQuaternaryStructure.renderProteinQuaternaryHbonds(viewer, ri);
} else if (RenderingInfoRaiser.PROTEIN_QUATERNARY_STRUCTURE_TRANSLUCENCY.equals(
ri.getSource())) {
ViewerRenderProteinQuaternaryStructure.renderProteinQuaternaryStructureTranslucency(
viewer, ri);
} else if (RenderingInfoRaiser.NUCLEIC.equals(ri.getSource())) {
ViewerRenderNucleic.renderNucleicAtoms(viewer, ri);
} else if (RenderingInfoRaiser.NUCLEIC_COVALENT_BONDS.equals(ri.getSource())) {
ViewerRenderNucleic.renderNucleicBonds(viewer, ri);
} else if (RenderingInfoRaiser.NUCLEIC_HBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderNucleic.renderNucleicHBond(viewer, ri);
} else if (RenderingInfoRaiser.HETERO.equals(ri.getSource())) {
ViewerRenderHetero.renderHeteroAtoms(viewer, ri);
} else if (RenderingInfoRaiser.HETERO_COVALENT_BONDS.equals(ri.getSource())) {
ViewerRenderHetero.renderHeteroBonds(viewer, ri);
} else if (RenderingInfoRaiser.HETERO_HBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderHetero.renderHeteroHBond(viewer, ri);
} else if (RenderingInfoRaiser.WATER.equals(ri.getSource())) {
ViewerRenderWater.renderWater(viewer, ri);
} else if (RenderingInfoRaiser.WATER_COVALENT_BONDS.equals(ri.getSource())) {
ViewerRenderWater.renderWaterBonds(viewer, ri);
} else if (RenderingInfoRaiser.WATER_HBOND_STRUCTURE.equals(ri.getSource())) {
ViewerRenderWater.renderWaterHBonds(viewer, ri);
} else if (RenderingInfoRaiser.JMOLPROPERTIES.equals(ri.getSource())) {
renderJmolProperties(ri);
}
StarBiochemMain.setGlassPaneVisible(false);
} catch (StarBiochemException e1) {
this.closeException = e1;
this.raise_CloseMoleculeEvent();
}
}
}