private void cardinality(Subject subject, String min, String max) {
if ("0".equals(min) && "1".equals(max)) subject.predicate("os:occurs", "os:Zero-or-one");
else if ("0".equals(min) && "*".equals(max)) subject.predicate("os:occurs", "os:Zero-or-many");
else if ("1".equals(min) && "1".equals(max)) subject.predicate("os:occurs", "os:Exactly-one");
else if ("1".equals(min) && "*".equals(max)) subject.predicate("os:occurs", "os:One-or-many");
else throw new Error("Unhandled cardinality combination (" + min + "/" + max + ")");
}
private void genExtension(StructureDefinition extension) throws FHIRException {
// for now, only simple extensions
if (extension.getSnapshot().getElement().size() == 5
&& !hasSection("Extension: " + tail(extension.getUrl()))) {
ElementDefinition base = extension.getSnapshot().getElement().get(0);
ElementDefinition valueX = extension.getSnapshot().getElement().get(4);
Section section = section("Extension: " + tail(extension.getUrl()));
Subject subject = section.subject("ex:birthplace");
subject.predicate("a", "fhir:ExtensionDefinition");
subject.label(extension.getTitle());
subject.comment(extension.getDescription());
if (extension.hasVersion())
subject.predicate("fhir:version", literal(extension.getVersion()));
if (extension.hasCopyright())
subject.predicate("dc:rights", literal(extension.getCopyright()));
subject.predicate(
"fhir:status",
complex()
.predicate(
"a", "fhir:conformance-resource-status\\#" + extension.getStatus().toCode()));
subject.predicate(
"fhir:canonicalStatus",
complex()
.predicate(
"a", getCanonicalStatus("ValueSet.status", extension.getStatus().toCode())));
for (UsageContext cc : extension.getUseContext())
codedTriple(subject, "fhir:useContext", cc.getValueCodeableConcept());
if (extension.hasDate())
subject.predicate("dc:date", literal(extension.getDateElement().asStringValue()));
subject.predicate("rdfs:range", processType(valueX.getType().get(0).getCode()));
if (base.getIsModifier()) subject.predicate("fhir:flag", "fhir:isModifier");
}
}
private void gen(PrimitiveType t) {
Section section = section(t.getCode());
section.triple("fhir:" + t.getCode(), "rdfs:subClassOf", "fhir:Primitive");
section.comment("fhir:" + t.getCode(), t.getDefinition());
nilInstance.predicate("a", "fhir:" + t.getCode());
section.triple("fhir:" + t.getCode() + ".value", "rdfs:subPropertyOf", "fhir:Primitive.value");
section.triple("fhir:" + t.getCode() + ".value", "rdfs:domain", "fhir:" + t.getCode());
if (t.getSchemaType().endsWith("+")) {
section.triple(
"fhir:" + t.getCode() + ".value",
"rdfs:range",
"xs:" + t.getSchemaType().substring(0, t.getSchemaType().length() - 1));
section.triple(
"fhir:" + t.getCode() + ".value",
"owl:withRestriction",
complex().predicate("xs:pattern", literal(t.getRegex())));
} else if (t.getSchemaType().contains(",")) {
section.triple(
"fhir:" + t.getCode() + ".value",
"rdfs:range",
complex()
.predicate("a", "owl:Class")
.predicate("owl:unionOf", "(" + t.getSchemaType().replace(",", "") + ")"),
"xs:union of " + t.getSchemaType());
} else
section.triple("fhir:" + t.getCode() + ".value", "rdfs:range", "xs:" + t.getSchemaType());
}
protected void codedTriple(Subject subject, String predicate, CodeableConcept cc) {
for (Coding c : cc.getCoding()) {
String s = getLinkedForm(c);
if (s != null)
subject.predicate(
predicate, new StringType(s), c.hasDisplay() ? c.getDisplay() : cc.getText());
}
}
private void gen(ProfiledType t) throws Exception {
Section section = section(t.getName());
section.triple("fhir:" + t.getName(), "rdfs:subClassOf", "fhir:" + t.getBaseType());
nilInstance.predicate("a", "fhir:" + t.getName());
section.label("fhir:" + t.getName(), t.getDescription());
section.comment("fhir:" + t.getName(), t.getDefinition());
if (!Utilities.noString(t.getInvariant().getTurtle()))
section.importTtl(t.getInvariant().getTurtle());
}
private void gen(TypeDefn t) throws Exception {
Section section = section(t.getName());
if (t.getTypes().isEmpty()) section.triple("fhir:" + t.getName(), "a", "rdfs:Class");
else section.triple("fhir:" + t.getName(), "rdfs:subClassOf", "fhir:Element");
section.label("fhir:" + t.getName(), t.getShortDefn());
section.comment("fhir:" + t.getName(), t.getDefinition());
if (t.getName().equals("Reference"))
section.triple(
"fhir:" + t.getName(),
"a",
"fhir:Resource"); // This is so that a reference can be replaced by a direct reference to
// it's target
nilInstance.predicate("a", "fhir:" + t.getName());
processMappings(section, "fhir:" + t.getName(), t);
for (ElementDefn e : t.getElements()) {
if (e.getName().endsWith("[x]")) {
String cn = e.getName().substring(0, e.getName().length() - 3);
section.triple("fhir:" + t.getName() + "." + cn, "a", "rdf:Property");
section.label("fhir:" + t.getName() + "." + cn, e.getShortDefn());
section.comment("fhir:" + t.getName() + "." + cn, e.getDefinition());
processMappings(section, "fhir:" + t.getName() + "." + cn, e);
for (TypeRef tr : e.typeCode().equals("*") ? getAnyTypes() : e.getTypes()) {
String en = cn + Utilities.capitalize(tr.getName());
section.triple(
"fhir:" + t.getName() + "." + en,
"rdfs:subPropertyOf",
"fhir:" + t.getName() + "." + cn);
section.triple("fhir:" + t.getName() + "." + en, "rdfs:domain", "fhir:" + t.getName());
genRange(section, t.getName(), en, e, tr, true);
}
} else {
section.triple("fhir:" + t.getName() + "." + e.getName(), "a", "rdf:Property");
section.comment("fhir:" + t.getName() + "." + e.getName(), e.getDefinition());
section.triple(
"fhir:" + t.getName() + "." + e.getName(), "rdfs:domain", "fhir:" + t.getName());
processMappings(section, "fhir:" + t.getName() + "." + e.getName(), e);
genRange(
section,
t.getName(),
e.getName(),
e,
e.getTypes().isEmpty() ? null : e.getTypes().get(0),
true);
}
}
processAnonTypes();
}
private void gen(DefinedStringPattern t) {
Section section = section(t.getCode());
section.triple("fhir:" + t.getCode(), "rdfs:subClassOf", "fhir:" + t.getBase());
section.comment("fhir:" + t.getCode(), t.getDefinition());
nilInstance.predicate("a", "fhir:" + t.getCode());
section.triple(
"fhir:" + t.getCode() + ".value", "rdfs:subPropertyOf", "fhir:" + t.getBase() + ".value");
if (t.getSchema().endsWith("+")) {
section.triple(
"fhir:" + t.getCode() + ".value",
"rdfs:range",
t.getSchema().substring(0, t.getSchema().length() - 1));
section.triple(
"fhir:" + t.getCode() + ".value",
"owl:withRestriction",
complex().predicate("xs:pattern", literal(t.getRegex())));
} else section.triple("fhir:" + t.getCode() + ".value", "rdfs:range", t.getSchema());
}
