public SpecimenSourceComponent copy(Specimen e) {
SpecimenSourceComponent dst = e.new SpecimenSourceComponent();
dst.relationship = relationship == null ? null : relationship.copy();
dst.target = new ArrayList<ResourceReference>();
for (ResourceReference i : target) dst.target.add(i.copy());
return dst;
}
public SpecimenTreatmentComponent copy(Specimen e) {
SpecimenTreatmentComponent dst = e.new SpecimenTreatmentComponent();
dst.description = description == null ? null : description.copy();
dst.procedure = procedure == null ? null : procedure.copy();
dst.additive = new ArrayList<ResourceReference>();
for (ResourceReference i : additive) dst.additive.add(i.copy());
return dst;
}
public ResultGroupComponent copy(DiagnosticReport e) {
ResultGroupComponent dst = new ResultGroupComponent();
dst.name = name == null ? null : name.copy();
dst.specimen = specimen == null ? null : specimen.copy();
dst.group = new ArrayList<ResultGroupComponent>();
for (ResultGroupComponent i : group) dst.group.add(i.copy(e));
dst.result = new ArrayList<ResourceReference>();
for (ResourceReference i : result) dst.result.add(i.copy());
return dst;
}
public void cleanResources() {
if (this.active.get()) {
ResourceReference ref;
while ((ref = (ResourceReference) this.morque.poll()) != null) {
synchronized (this) {
this.resources.remove(ref);
}
ref.getResource().dispose();
}
}
}
public Supply copy() {
Supply dst = new Supply();
dst.name = name == null ? null : name.copy();
dst.identifier = identifier == null ? null : identifier.copy();
dst.status = status == null ? null : status.copy();
dst.orderedItem = orderedItem == null ? null : orderedItem.copy();
dst.patient = patient == null ? null : patient.copy();
dst.dispense = new ArrayList<SupplyDispenseComponent>();
for (SupplyDispenseComponent i : dispense) dst.dispense.add(i.copy(dst));
return dst;
}
public DiagnosticOrderItemComponent copy(DiagnosticOrder e) {
DiagnosticOrderItemComponent dst = e.new DiagnosticOrderItemComponent();
dst.code = code == null ? null : code.copy();
dst.specimen = new ArrayList<ResourceReference>();
for (ResourceReference i : specimen) dst.specimen.add(i.copy());
dst.bodySite = bodySite == null ? null : bodySite.copy();
dst.status = status == null ? null : status.copy();
dst.event = new ArrayList<DiagnosticOrderEventComponent>();
for (DiagnosticOrderEventComponent i : event) dst.event.add(i.copy(e));
return dst;
}
public AdverseReaction copy() {
AdverseReaction dst = new AdverseReaction();
dst.reactionDate = reactionDate == null ? null : reactionDate.copy();
dst.subject = subject == null ? null : subject.copy();
dst.didNotOccurFlag = didNotOccurFlag == null ? null : didNotOccurFlag.copy();
dst.recorder = recorder == null ? null : recorder.copy();
dst.symptom = new ArrayList<AdverseReactionSymptomComponent>();
for (AdverseReactionSymptomComponent i : symptom) dst.symptom.add(i.copy(dst));
dst.exposure = new ArrayList<AdverseReactionExposureComponent>();
for (AdverseReactionExposureComponent i : exposure) dst.exposure.add(i.copy(dst));
return dst;
}
public DiagnosticReportRequestDetailComponent copy(DiagnosticReport e) {
DiagnosticReportRequestDetailComponent dst = new DiagnosticReportRequestDetailComponent();
dst.encounter = encounter == null ? null : encounter.copy();
dst.requestOrderId = requestOrderId == null ? null : requestOrderId.copy();
dst.receiverOrderId = receiverOrderId == null ? null : receiverOrderId.copy();
dst.requestTest = new ArrayList<CodeableConcept>();
for (CodeableConcept i : requestTest) dst.requestTest.add(i.copy());
dst.bodySite = bodySite == null ? null : bodySite.copy();
dst.requester = requester == null ? null : requester.copy();
dst.clinicalInfo = clinicalInfo == null ? null : clinicalInfo.copy();
return dst;
}
public void shutdown() {
if (this.active.compareAndSet(true, false)) {
synchronized (this) {
this.entries.clear();
for (final ResourceReference ref : this.resources) {
ref.getResource().dispose();
}
this.resources.clear();
while (this.morque.poll() != null) {}
}
}
}
public OrderResponse copy() {
OrderResponse dst = new OrderResponse();
dst.request = request == null ? null : request.copy();
dst.date = date == null ? null : date.copy();
dst.who = who == null ? null : who.copy();
dst.authority = authority == null ? null : authority.copy();
dst.cost = cost == null ? null : cost.copy();
dst.code = code == null ? null : code.copy();
dst.description = description == null ? null : description.copy();
dst.fulfillment = new ArrayList<ResourceReference>();
for (ResourceReference i : fulfillment) dst.fulfillment.add(i.copy());
return dst;
}
public SequencingAnalysis copy() {
SequencingAnalysis dst = new SequencingAnalysis();
dst.subject = subject == null ? null : subject.copy();
dst.date = date == null ? null : date.copy();
dst.name = name == null ? null : name.copy();
dst.genome = genome == null ? null : genome.copy(dst);
dst.file = new ArrayList<Attachment>();
for (Attachment i : file) dst.file.add(i.copy());
dst.inputLab = new ArrayList<ResourceReference>();
for (ResourceReference i : inputLab) dst.inputLab.add(i.copy());
dst.inputAnalysis = new ArrayList<ResourceReference>();
for (ResourceReference i : inputAnalysis) dst.inputAnalysis.add(i.copy());
return dst;
}
public SupplyDispenseComponent copy(Supply e) {
SupplyDispenseComponent dst = e.new SupplyDispenseComponent();
dst.identifier = identifier == null ? null : identifier.copy();
dst.status = status == null ? null : status.copy();
dst.type = type == null ? null : type.copy();
dst.quantity = quantity == null ? null : quantity.copy();
dst.suppliedItem = suppliedItem == null ? null : suppliedItem.copy();
dst.supplier = supplier == null ? null : supplier.copy();
dst.whenPrepared = whenPrepared == null ? null : whenPrepared.copy();
dst.whenHandedOver = whenHandedOver == null ? null : whenHandedOver.copy();
dst.destination = destination == null ? null : destination.copy();
dst.receiver = new ArrayList<ResourceReference>();
for (ResourceReference i : receiver) dst.receiver.add(i.copy());
return dst;
}
public DiagnosticOrderEventComponent copy(DiagnosticOrder e) {
DiagnosticOrderEventComponent dst = e.new DiagnosticOrderEventComponent();
dst.status = status == null ? null : status.copy();
dst.date = date == null ? null : date.copy();
dst.actor = actor == null ? null : actor.copy();
return dst;
}
public AdverseReactionExposureComponent copy(AdverseReaction e) {
AdverseReactionExposureComponent dst = e.new AdverseReactionExposureComponent();
dst.exposureDate = exposureDate == null ? null : exposureDate.copy();
dst.exposureType = exposureType == null ? null : exposureType.copy();
dst.causalityExpectation = causalityExpectation == null ? null : causalityExpectation.copy();
dst.substance = substance == null ? null : substance.copy();
return dst;
}
public DiagnosticOrder copy() {
DiagnosticOrder dst = new DiagnosticOrder();
dst.subject = subject == null ? null : subject.copy();
dst.orderer = orderer == null ? null : orderer.copy();
dst.identifier = new ArrayList<Identifier>();
for (Identifier i : identifier) dst.identifier.add(i.copy());
dst.encounter = encounter == null ? null : encounter.copy();
dst.clinicalNotes = clinicalNotes == null ? null : clinicalNotes.copy();
dst.specimen = new ArrayList<ResourceReference>();
for (ResourceReference i : specimen) dst.specimen.add(i.copy());
dst.status = status == null ? null : status.copy();
dst.event = new ArrayList<DiagnosticOrderEventComponent>();
for (DiagnosticOrderEventComponent i : event) dst.event.add(i.copy(dst));
dst.item = new ArrayList<DiagnosticOrderItemComponent>();
for (DiagnosticOrderItemComponent i : item) dst.item.add(i.copy(dst));
return dst;
}
/**
* Registers a resource with this connector using the given key. This will make the URL for
* retrieving the resource available to the client-side connector using {@link
* com.vaadin.terminal.gwt.client.ui.AbstractConnector#getResourceUrl(String)} with the same key.
*
* @param key the string key to associate the resource with
* @param resource the resource to set, or <code>null</code> to clear a previous association.
*/
protected void setResource(String key, Resource resource) {
ResourceReference resourceReference = ResourceReference.create(resource, this, key);
if (resourceReference == null) {
getState().resources.remove(key);
} else {
getState().resources.put(key, resourceReference);
}
}
public Device copy() {
Device dst = new Device();
dst.type = type == null ? null : type.copy();
dst.manufacturer = manufacturer == null ? null : manufacturer.copy();
dst.model = model == null ? null : model.copy();
dst.version = version == null ? null : version.copy();
dst.expiry = expiry == null ? null : expiry.copy();
dst.identity = identity == null ? null : identity.copy(dst);
dst.owner = owner == null ? null : owner.copy();
dst.assignedId = new ArrayList<Identifier>();
for (Identifier i : assignedId) dst.assignedId.add(i.copy());
dst.location = location == null ? null : location.copy();
dst.patient = patient == null ? null : patient.copy();
dst.contact = new ArrayList<Contact>();
for (Contact i : contact) dst.contact.add(i.copy());
dst.url = url == null ? null : url.copy();
return dst;
}
public SpecimenCollectionComponent copy(Specimen e) {
SpecimenCollectionComponent dst = e.new SpecimenCollectionComponent();
dst.collector = collector == null ? null : collector.copy();
dst.comments = new ArrayList<String_>();
for (String_ i : comments) dst.comments.add(i.copy());
dst.collectedTime = collectedTime == null ? null : collectedTime.copy();
dst.quantity = quantity == null ? null : quantity.copy();
return dst;
}
public Coding copy() {
Coding dst = new Coding();
dst.system = system == null ? null : system.copy();
dst.version = version == null ? null : version.copy();
dst.code = code == null ? null : code.copy();
dst.display = display == null ? null : display.copy();
dst.primary = primary == null ? null : primary.copy();
dst.valueSet = valueSet == null ? null : valueSet.copy();
return dst;
}
public SpecimenContainerComponent copy(Specimen e) {
SpecimenContainerComponent dst = e.new SpecimenContainerComponent();
dst.identifier = new ArrayList<Identifier>();
for (Identifier i : identifier) dst.identifier.add(i.copy());
dst.description = description == null ? null : description.copy();
dst.type = type == null ? null : type.copy();
dst.capacity = capacity == null ? null : capacity.copy();
dst.specimenQuantity = specimenQuantity == null ? null : specimenQuantity.copy();
dst.additive = additive == null ? null : additive.copy();
return dst;
}
public SpecimenCollectionComponent copy(Specimen e) {
SpecimenCollectionComponent dst = e.new SpecimenCollectionComponent();
dst.collector = collector == null ? null : collector.copy();
dst.comment = new ArrayList<String_>();
for (String_ i : comment) dst.comment.add(i.copy());
dst.collectedTime = collectedTime == null ? null : collectedTime.copy();
dst.quantity = quantity == null ? null : quantity.copy();
dst.method = method == null ? null : method.copy();
dst.sourceSite = sourceSite == null ? null : sourceSite.copy();
return dst;
}
public Specimen copy() {
Specimen dst = new Specimen();
dst.identifier = identifier == null ? null : identifier.copy();
dst.type = type == null ? null : type.copy();
dst.source = new ArrayList<SpecimenSourceComponent>();
for (SpecimenSourceComponent i : source) dst.source.add(i.copy(dst));
dst.subject = subject == null ? null : subject.copy();
dst.accessionIdentifier = new ArrayList<Identifier>();
for (Identifier i : accessionIdentifier) dst.accessionIdentifier.add(i.copy());
dst.collection = collection == null ? null : collection.copy(dst);
return dst;
}
public DocumentReference copy() {
DocumentReference dst = new DocumentReference();
dst.masterIdentifier = masterIdentifier == null ? null : masterIdentifier.copy();
dst.identifier = new ArrayList<Identifier>();
for (Identifier i : identifier) dst.identifier.add(i.copy());
dst.subject = subject == null ? null : subject.copy();
dst.type = type == null ? null : type.copy();
dst.subtype = subtype == null ? null : subtype.copy();
dst.author = new ArrayList<ResourceReference>();
for (ResourceReference i : author) dst.author.add(i.copy());
dst.custodian = custodian == null ? null : custodian.copy();
dst.authenticator = authenticator == null ? null : authenticator.copy();
dst.created = created == null ? null : created.copy();
dst.indexed = indexed == null ? null : indexed.copy();
dst.status = status == null ? null : status.copy();
dst.docStatus = docStatus == null ? null : docStatus.copy();
dst.supercedes = supercedes == null ? null : supercedes.copy();
dst.description = description == null ? null : description.copy();
dst.confidentiality = confidentiality == null ? null : confidentiality.copy();
dst.primaryLanguage = primaryLanguage == null ? null : primaryLanguage.copy();
dst.mimeType = mimeType == null ? null : mimeType.copy();
dst.format = format == null ? null : format.copy();
dst.size = size == null ? null : size.copy();
dst.hash = hash == null ? null : hash.copy();
dst.location = location == null ? null : location.copy();
dst.service = service == null ? null : service.copy(dst);
dst.context = context == null ? null : context.copy(dst);
return dst;
}
public DiagnosticReport copy() {
DiagnosticReport dst = new DiagnosticReport();
dst.status = status == null ? null : status.copy();
dst.issued = issued == null ? null : issued.copy();
dst.subject = subject == null ? null : subject.copy();
dst.performer = performer == null ? null : performer.copy();
dst.reportId = reportId == null ? null : reportId.copy();
dst.requestDetail = new ArrayList<DiagnosticReportRequestDetailComponent>();
for (DiagnosticReportRequestDetailComponent i : requestDetail)
dst.requestDetail.add(i.copy(dst));
dst.serviceCategory = serviceCategory == null ? null : serviceCategory.copy();
dst.diagnostic = diagnostic == null ? null : diagnostic.copy();
dst.results = results == null ? null : results.copy(dst);
dst.image = new ArrayList<ResourceReference>();
for (ResourceReference i : image) dst.image.add(i.copy());
dst.conclusion = conclusion == null ? null : conclusion.copy();
dst.codedDiagnosis = new ArrayList<CodeableConcept>();
for (CodeableConcept i : codedDiagnosis) dst.codedDiagnosis.add(i.copy());
dst.representation = new ArrayList<Attachment>();
for (Attachment i : representation) dst.representation.add(i.copy());
return dst;
}
public SecurityEventParticipantComponent copy(SecurityEvent e) {
SecurityEventParticipantComponent dst = e.new SecurityEventParticipantComponent();
dst.role = new ArrayList<CodeableConcept>();
for (CodeableConcept i : role) dst.role.add(i.copy());
dst.reference = reference == null ? null : reference.copy();
dst.userId = userId == null ? null : userId.copy();
dst.authId = authId == null ? null : authId.copy();
dst.name = name == null ? null : name.copy();
dst.requestor = requestor == null ? null : requestor.copy();
dst.media = media == null ? null : media.copy();
dst.network = network == null ? null : network.copy(e);
return dst;
}
public SecurityEventObjectComponent copy(SecurityEvent e) {
SecurityEventObjectComponent dst = e.new SecurityEventObjectComponent();
dst.identifier = identifier == null ? null : identifier.copy();
dst.reference = reference == null ? null : reference.copy();
dst.type = type == null ? null : type.copy();
dst.role = role == null ? null : role.copy();
dst.lifecycle = lifecycle == null ? null : lifecycle.copy();
dst.sensitivity = sensitivity == null ? null : sensitivity.copy();
dst.name = name == null ? null : name.copy();
dst.query = query == null ? null : query.copy();
dst.detail = new ArrayList<SecurityEventObjectDetailComponent>();
for (SecurityEventObjectDetailComponent i : detail) dst.detail.add(i.copy(e));
return dst;
}
public RelatedPerson copy() {
RelatedPerson dst = new RelatedPerson();
dst.identifier = new ArrayList<Identifier>();
for (Identifier i : identifier) dst.identifier.add(i.copy());
dst.patient = patient == null ? null : patient.copy();
dst.relationship = relationship == null ? null : relationship.copy();
dst.name = name == null ? null : name.copy();
dst.telecom = new ArrayList<Contact>();
for (Contact i : telecom) dst.telecom.add(i.copy());
dst.gender = gender == null ? null : gender.copy();
dst.address = address == null ? null : address.copy();
dst.photo = new ArrayList<Attachment>();
for (Attachment i : photo) dst.photo.add(i.copy());
return dst;
}
public Order copy() {
Order dst = new Order();
dst.date = date == null ? null : date.copy();
dst.subject = subject == null ? null : subject.copy();
dst.source = source == null ? null : source.copy();
dst.target = target == null ? null : target.copy();
dst.reason = reason == null ? null : reason.copy();
dst.authority = authority == null ? null : authority.copy();
dst.when = when == null ? null : when.copy(dst);
dst.detail = new ArrayList<ResourceReference>();
for (ResourceReference i : detail) dst.detail.add(i.copy());
return dst;
}
public MedicationAdministration copy() {
MedicationAdministration dst = new MedicationAdministration();
dst.identifier = new ArrayList<Identifier>();
for (Identifier i : identifier) dst.identifier.add(i.copy());
dst.status = status == null ? null : status.copy();
dst.patient = patient == null ? null : patient.copy();
dst.practitioner = practitioner == null ? null : practitioner.copy();
dst.encounter = encounter == null ? null : encounter.copy();
dst.prescription = prescription == null ? null : prescription.copy();
dst.wasNotGiven = wasNotGiven == null ? null : wasNotGiven.copy();
dst.reasonNotGiven = new ArrayList<CodeableConcept>();
for (CodeableConcept i : reasonNotGiven) dst.reasonNotGiven.add(i.copy());
dst.whenGiven = whenGiven == null ? null : whenGiven.copy();
dst.medication = medication == null ? null : medication.copy();
dst.device = new ArrayList<ResourceReference>();
for (ResourceReference i : device) dst.device.add(i.copy());
dst.dosage = new ArrayList<MedicationAdministrationDosageComponent>();
for (MedicationAdministrationDosageComponent i : dosage) dst.dosage.add(i.copy(dst));
return dst;
}
public GVFVariant copy() {
GVFVariant dst = new GVFVariant();
dst.subject = subject == null ? null : subject.copy(dst);
dst.meta = meta == null ? null : meta.copy();
dst.sourceFile = sourceFile == null ? null : sourceFile.copy();
dst.seqid = seqid == null ? null : seqid.copy();
dst.source = source == null ? null : source.copy();
dst.type = type == null ? null : type.copy();
dst.start = start == null ? null : start.copy();
dst.end = end == null ? null : end.copy();
dst.score = score == null ? null : score.copy();
dst.strand = strand == null ? null : strand.copy();
dst.featureId = featureId == null ? null : featureId.copy();
dst.alias = alias == null ? null : alias.copy();
dst.dbxref = dbxref == null ? null : dbxref.copy(dst);
dst.variantSeq = new ArrayList<String_>();
for (String_ i : variantSeq) dst.variantSeq.add(i.copy());
dst.referenceSeq = referenceSeq == null ? null : referenceSeq.copy();
dst.variantFreq = new ArrayList<Decimal>();
for (Decimal i : variantFreq) dst.variantFreq.add(i.copy());
dst.variantEffect = new ArrayList<GVFVariantVariantEffectComponent>();
for (GVFVariantVariantEffectComponent i : variantEffect) dst.variantEffect.add(i.copy(dst));
dst.startRange = startRange == null ? null : startRange.copy(dst);
dst.endRange = endRange == null ? null : endRange.copy(dst);
dst.variantCodon = new ArrayList<String_>();
for (String_ i : variantCodon) dst.variantCodon.add(i.copy());
dst.referenceCodon = referenceCodon == null ? null : referenceCodon.copy();
dst.variantAA = new ArrayList<String_>();
for (String_ i : variantAA) dst.variantAA.add(i.copy());
dst.referenceAA = new ArrayList<String_>();
for (String_ i : referenceAA) dst.referenceAA.add(i.copy());
dst.breakpointDetail = breakpointDetail == null ? null : breakpointDetail.copy(dst);
dst.sequenceContext = sequenceContext == null ? null : sequenceContext.copy(dst);
dst.individual = new ArrayList<String_>();
for (String_ i : individual) dst.individual.add(i.copy());
dst.sample = new ArrayList<GVFVariantSampleComponent>();
for (GVFVariantSampleComponent i : sample) dst.sample.add(i.copy(dst));
return dst;
}