public void run_P50_skewed() {
FILE += "_S" + POP_SIZE;
N_GROUPS = 5;
POP_MODEL.setNumFullSibGroups(N_GROUPS);
int SKEW = 1;
POP_MODEL.setSkew(SKEW);
// runDiploid(DIR, FILE+"_5x10S_NA"+N_ALLELES+"_SKEW"+SKEW+".csv");
SKEW = 2;
POP_MODEL.setSkew(SKEW);
// runDiploid(DIR, FILE+"_5x10S_NA"+N_ALLELES+"_SKEW"+SKEW+".csv");
// SKEW = 3;
// POP_MODEL.setSkew(SKEW);
// runDiploid(DIR, FILE+"_5x10S_NA"+N_ALLELES+"_SKEW"+SKEW+".csv");
SKEW = 4;
POP_MODEL.setSkew(SKEW);
runDiploid(DIR, FILE + "_5x10S_NA" + N_ALLELES + "_SKEW" + SKEW + ".csv");
}
public APBCAccuracy() {
DIR = "papers" + File.separator + "kingroup2006_apbc" + File.separator + "output";
POP_SIZE = 50;
POP_MODEL.setSize(POP_SIZE);
N_ALLELES = 10;
MIN_NUM_LOCI = 1; // 1-paper
MAX_NUM_LOCI = 15; // 15-paper
N_TRIALS = 100; // 100-paper
}
public APBCAccuracySIMPS() {
POP_SIZE = 50;
POP_MODEL.setSize(POP_SIZE);
N_ALLELES = 10;
MIN_NUM_LOCI = 1; // 1-paper
MAX_NUM_LOCI = 15; // 15-paper
N_TRIALS = 100; // 100-paper
SIMPS_ITERATIONS = 100000;
FILE = "SIMPS";
ALG_MODEL = new SIMPS2AlgModel();
ALG_MODEL.setSibshipAlg(new DiploidSibship());
ALG_MODEL.setNumIters(SIMPS_ITERATIONS);
}