protected Dataset getCompleteData(IMonitor mon) throws Exception {
IHierarchicalDataFile file = null;
try {
if (mon != null) mon.worked(1);
file = HierarchicalDataFactory.getReader(path);
final hdf.object.Dataset set = (hdf.object.Dataset) file.getData(fullPath);
if (set.getStartDims() == null) set.getMetadata();
/**
* The diamond slicing can leave the dataset in memory, and the selection. Therefore if they
* were slicing in the DExplore view before going here, the full selection is broken, there is
* a sub slice selected.
*
* <p>TODO Get Peter to fix this some time.
*/
loader.resetDims(set);
final Object val = set.read();
return H5Utils.getSet(val, set);
} finally {
if (file != null) file.close();
}
}
@Override
public Dataset getDataset(IMonitor mon, SliceND slice) throws IOException {
if (slice.isAll()) {
try {
return getCompleteData(mon);
} catch (Exception e) {
throw new IOException("Cannot read " + path + ", " + fullPath, e);
}
}
final SliceObject so = new SliceObject();
so.setPath(path);
so.setName(fullPath);
so.setSlicedShape(slice.getSourceShape());
so.setSliceStart(slice.getStart());
so.setSliceStop(slice.getStop());
so.setSliceStep(slice.getStep());
if (cache.containsKey(so)) {
final Reference<Dataset> sr = cache.get(so);
if (sr.get() != null) {
return sr.get();
}
}
try {
Dataset set = loader.slice(so, mon);
cache.put(so, new SoftReference<Dataset>(set));
return set;
} catch (Exception e) {
throw new IOException("Cannot slice " + path + ", " + fullPath, e);
}
}