public void calMFBPCCsize(GoSet aGoSet) {
this.MFOsize = 0;
this.BPOsize = 0;
this.CCOsize = 0;
for (int node : this.Annotation) {
if (aGoSet.getSpace(node) == 'F') this.MFOsize++;
if (aGoSet.getSpace(node) == 'P') this.BPOsize++;
if (aGoSet.getSpace(node) == 'C') this.CCOsize++;
}
}
public void OutputType3Annotation(PrintWriter Fout, GoSet aGoSet) {
ArrayList<Integer> Ann = new ArrayList<Integer>();
for (Integer i : Annotation) {
Ann.add(i);
}
Collections.sort(Ann);
for (Integer i : Ann) {
if (this.getStoreAnnotationSize(aGoSet.getSpace(i)) == 0)
Fout.println(this.access + "\t" + proteinCommon.GOInt2Str(i));
}
}
