@Test
public void testFindCleavageSites() throws ParseException {
CleavageSiteFinder finder = new CleavageSiteFinderImpl(new CleavageSiteMatcher("[KR]|[^P]"));
TIntList sites = new TIntArrayList();
finder.find(new Protein("ACC1", "RESALYTNIKALASKR"), sites);
assertEquals(3, sites.size());
assertArrayEquals(new int[] {1, 10, 15}, sites.toArray());
}
@Test
public void testCountCleavageSites2() throws ParseException {
CleavageSiteFinder finder = new CleavageSiteFinderImpl(new CleavageSiteMatcher("[KR]|[^P]"));
assertEquals(0, finder.countCleavageSites(new Protein("ACC1", "ESALYTNI")));
}
