@SuppressWarnings("unchecked")
private void setUpForNotes(Sample sample) {
noteIdToIndicatorMap = new HashMap<String, String>();
List<Result> results = resultDAO.getResultsForSample(sample);
History searchHistory = new History();
searchHistory.setReferenceTable(NOTE_TABLE_ID);
historyList = new ArrayList<History>();
Note searchNote = new Note();
searchNote.setReferenceTableId(RESULT_TABLE_ID);
for (Result result : results) {
searchNote.setReferenceId(result.getId());
List<Note> notes = noteDAO.getAllNotesByRefIdRefTable(searchNote);
for (Note note : notes) {
searchHistory.setReferenceId(note.getId());
noteIdToIndicatorMap.put(
note.getId(), TestService.getLocalizedTestName(result.getAnalysis().getTest()));
historyList.addAll(auditTrailDAO.getHistoryByRefIdAndRefTableId(searchHistory));
}
}
newValueMap = new HashMap<String, String>();
}
private String getAppropriateResultValue(List<Result> results) {
Result result = results.get(0);
if (ResultType.DICTIONARY.matches(result.getResultType())) {
Dictionary dictionary = dictionaryDAO.getDictionaryById(result.getValue());
if (dictionary != null) {
return dictionary.getLocalizedName();
}
} else if (ResultType.isMultiSelectVariant(result.getResultType())) {
Dictionary dictionary = new Dictionary();
StringBuilder multiResult = new StringBuilder();
for (Result subResult : results) {
dictionary.setId(subResult.getValue());
dictionaryDAO.getData(dictionary);
if (dictionary.getId() != null) {
multiResult.append(dictionary.getLocalizedName());
multiResult.append(", ");
}
}
if (multiResult.length() > 0) {
multiResult.setLength(multiResult.length() - 2); // remove last ", "
}
return multiResult.toString();
} else {
String resultValue =
GenericValidator.isBlankOrNull(result.getValue()) ? "" : result.getValue();
if (!GenericValidator.isBlankOrNull(resultValue)
&& result.getAnalysis().getTest().getUnitOfMeasure() != null) {
resultValue += " " + result.getAnalysis().getTest().getUnitOfMeasure().getName();
}
return resultValue;
}
return "";
}
protected ActivityReportBean createActivityReportBean(Result result, boolean useTestName) {
ActivityReportBean item = new ActivityReportBean();
ResultService resultService = new ResultService(result);
SampleService sampleService =
new SampleService(result.getAnalysis().getSampleItem().getSample());
PatientService patientService = new PatientService(sampleService.getSample());
item.setResultValue(resultService.getResultValue("\n", true, true));
item.setTechnician(resultService.getSignature());
item.setAccessionNumber(sampleService.getAccessionNumber().substring(PREFIX_LENGTH));
item.setReceivedDate(sampleService.getReceivedDateWithTwoYearDisplay());
item.setResultDate(DateUtil.convertTimestampToTwoYearStringDate(result.getLastupdated()));
item.setCollectionDate(
DateUtil.convertTimestampToTwoYearStringDate(
result.getAnalysis().getSampleItem().getCollectionDate()));
List<String> values = new ArrayList<String>();
values.add(
patientService.getLastName() == null ? "" : patientService.getLastName().toUpperCase());
values.add(patientService.getNationalId());
String referringPatientId =
ObservationHistoryService.getValueForSample(
ObservationType.REFERRERS_PATIENT_ID, sampleService.getSample().getId());
values.add(referringPatientId == null ? "" : referringPatientId);
String name = StringUtil.buildDelimitedStringFromList(values, " / ", true);
if (useTestName) {
item.setPatientOrTestName(resultService.getTestName());
item.setNonPrintingPatient(name);
} else {
item.setPatientOrTestName(name);
}
return item;
}
protected ActionForward performAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
String forward = FWD_SUCCESS;
request.setAttribute(ALLOW_EDITS_KEY, "true");
BaseActionForm dynaForm = (BaseActionForm) form;
// server-side validation (validation.xml)
ActionMessages errors = dynaForm.validate(mapping, request);
// bugzilla 2614 allow for NB domain samples
String selectedTestId = "";
String referenceTableId = SystemConfiguration.getInstance().getResultReferenceTableId();
String refId = (String) dynaForm.get("noteRefId");
String noteIds = (String) dynaForm.get("noteIds");
String noteSubjects = (String) dynaForm.get("noteSubjects");
String noteTexts = (String) dynaForm.get("noteTexts");
String noteTypes = (String) dynaForm.get("noteTypes");
String noteLastupdateds = (String) dynaForm.get("noteLastupdateds");
List noteIdList = new ArrayList();
List noteSubjectList = new ArrayList();
List noteTextList = new ArrayList();
List noteTypeList = new ArrayList();
List noteLastupdatedList = new ArrayList();
String textSeparator = SystemConfiguration.getInstance().getDefaultTextSeparator();
NoteDAO noteDAO = new NoteDAOImpl();
SystemUserDAO systemUserDAO = new SystemUserDAOImpl();
// bugzilla 2571 go through ReferenceTablesDAO to get reference tables info
ReferenceTablesDAO referenceTablesDAO = new ReferenceTablesDAOImpl();
// get sysUserId from login module
UserSessionData usd = (UserSessionData) request.getSession().getAttribute(USER_SESSION_DATA);
String sysUserId = String.valueOf(usd.getSystemUserId());
org.hibernate.Transaction tx = HibernateUtil.getSession().beginTransaction();
try {
textSeparator = StringUtil.convertStringToRegEx(textSeparator);
SystemUser systemUser = new SystemUser();
systemUser.setId(sysUserId);
systemUserDAO.getData(systemUser);
// get all the data required to forward to correct page
// get analysis id from result
ResultDAO resultDAO = new ResultDAOImpl();
Result result = new Result();
result.setId(refId);
resultDAO.getData(result);
String analysisId = result.getAnalysis().getId();
AnalysisDAO analysisDAO = new AnalysisDAOImpl();
Analysis analysis = new Analysis();
analysis.setId(analysisId);
analysisDAO.getData(analysis);
// get test id from analysis
selectedTestId = analysis.getTest().getId();
// get domain from sample
SampleItemDAO sampleItemDAO = new SampleItemDAOImpl();
SampleItem sampleItem = new SampleItem();
sampleItem.setId(analysis.getSampleItem().getId());
sampleItemDAO.getData(sampleItem);
SampleDAO sampleDAO = new SampleDAOImpl();
Sample sample = new Sample();
// bugzilla 1773 need to store sample not sampleId for use in sorting
sample.setId(sampleItem.getSample().getId());
sampleDAO.getData(sample);
// bugzilla 2614 allow for NB domain samples
// now that we have the domain (for forwarding to correct fail page)
// validate note popup form data!
try {
// bugzilla 2254 moved loadListFromStringOfElements to StringUtil
noteIdList = StringUtil.loadListFromStringOfElements(noteIds, textSeparator, false);
noteLastupdatedList =
StringUtil.loadListFromStringOfElements(noteLastupdateds, textSeparator, false);
// these three need to be validated for empty strings
noteSubjectList =
StringUtil.loadListFromStringOfElements(noteSubjects, textSeparator, true);
noteTextList = StringUtil.loadListFromStringOfElements(noteTexts, textSeparator, true);
noteTypeList = StringUtil.loadListFromStringOfElements(noteTypes, textSeparator, true);
} catch (Exception e) {
// bugzilla 2154
LogEvent.logError("ResultsEntryNotesUpdateAction", "performAction()", e.toString());
String messageKey = "note.note";
ActionError error = new ActionError("errors.invalid", getMessageForKey(messageKey), null);
errors.add(ActionMessages.GLOBAL_MESSAGE, error);
saveErrors(request, errors);
forward = FWD_FAIL;
return mapping.findForward(forward);
}
for (int i = 0; i < noteIdList.size(); i++) {
Note note = new Note();
String noteId = (String) noteIdList.get(i);
note.setReferenceId(refId);
// bugzilla 1922
// bugzilla 2571 go through ReferenceTablesDAO to get reference tables info
ReferenceTables referenceTables = new ReferenceTables();
referenceTables.setId(referenceTableId);
// bugzilla 2571
referenceTablesDAO.getData(referenceTables);
note.setReferenceTables(referenceTables);
note.setSystemUser(systemUser);
note.setSystemUserId(sysUserId);
// 1926 for audit trail
note.setSysUserId(sysUserId);
if (noteId != null && !noteId.equals("0")) {
note.setId((String) noteIdList.get(i));
note.setSubject((String) noteSubjectList.get(i));
note.setText((String) noteTextList.get(i));
note.setNoteType((String) noteTypeList.get(i));
Timestamp noteTimestamp = null;
if (!StringUtil.isNullorNill((String) noteLastupdatedList.get(i))) {
noteTimestamp = DateUtil.formatStringToTimestamp((String) noteLastupdatedList.get(i));
}
note.setLastupdated(noteTimestamp);
// UPDATE
noteDAO.updateData(note);
// }
} else {
// this is a new note
note.setSubject((String) noteSubjectList.get(i));
note.setText((String) noteTextList.get(i));
note.setNoteType((String) noteTypeList.get(i));
// INSERT
noteDAO.insertData(note);
}
}
tx.commit();
return getForward(mapping.findForward(forward), selectedTestId, analysisId);
} catch (LIMSRuntimeException lre) {
// bugzilla 2154
LogEvent.logError("ResultsEntryNotesUpdateAction", "performAction()", lre.toString());
tx.rollback();
errors = new ActionMessages();
ActionError error = null;
if (lre.getException() instanceof org.hibernate.StaleObjectStateException) {
error = new ActionError("errors.OptimisticLockException", null, null);
} else {
if (lre.getException() instanceof LIMSDuplicateRecordException) {
java.util.Locale locale =
(java.util.Locale)
request.getSession().getAttribute("org.apache.struts.action.LOCALE");
String messageKey = "note.note";
String msg =
ResourceLocator.getInstance().getMessageResources().getMessage(locale, messageKey);
error = new ActionError("errors.DuplicateRecord", msg, null);
} else {
error = new ActionError("errors.UpdateException", null, null);
}
}
errors.add(ActionMessages.GLOBAL_MESSAGE, error);
saveErrors(request, errors);
request.setAttribute(Globals.ERROR_KEY, errors);
// disable previous and next
request.setAttribute(PREVIOUS_DISABLED, "true");
request.setAttribute(NEXT_DISABLED, "true");
// default forward fail
forward = FWD_FAIL;
} finally {
HibernateUtil.closeSession();
}
if (forward.equals(FWD_FAIL)
|| forward.equals(FWD_FAIL_HUMAN)
|| forward.equals(FWD_FAIL_ANIMAL)) return mapping.findForward(forward);
// initialize the form
dynaForm.initialize(mapping);
// we need this for subsequent actions to
// get data related to note parent for forwarding to next page
request.setAttribute("refId", refId);
request.setAttribute(SELECTED_TEST_ID, selectedTestId);
return mapping.findForward(forward);
}
