private List<ExecutionResult> executeKatGcp(
JobOutputMap jfCountOutputs, String jobPrefix, int threads, int memory, boolean runInParallel)
throws InterruptedException, ProcessExecutionException, ConanParameterException {
List<ExecutionResult> output = new ArrayList<>();
for (Map.Entry<String, Set<File>> entry : jfCountOutputs.entrySet()) {
for (File inputFile : entry.getValue()) {
File outputPrefix = new File(inputFile.getAbsolutePath() + ".kat-gcp");
File matrixFile = new File(outputPrefix + ".mx");
File plotFile = new File(matrixFile.getAbsolutePath() + ".png");
KatGcpV1 katGcpProc = this.makeKatGcpProc(inputFile, outputPrefix, threads);
KatPlotDensityV1 katPlotDensityProc = this.makeKatPlotDensityProc(matrixFile, plotFile);
katGcpProc.addPostCommand(katPlotDensityProc.getCommand());
ExecutionResult result =
this.conanExecutorService.executeProcess(
katGcpProc,
inputFile.getParentFile(),
jobPrefix + "-" + inputFile.getName(),
threads,
memory,
runInParallel);
output.add(result);
}
}
return output;
}
