public int getRowNumber(FragmentIonType type, int location, int rowCount) {
int row = -1;
if (type.equals(FragmentIonType.X_ION)
|| type.equals(FragmentIonType.Y_ION)
|| type.equals(FragmentIonType.Z_ION)) {
row = rowCount - location - 1;
} else if (type.equals(FragmentIonType.A_ION)
|| type.equals(FragmentIonType.B_ION)
|| type.equals(FragmentIonType.C_ION)) {
row = location;
}
return row;
}
public int getColumnNumber(
int precursorCharge, FragmentIonType type, int charge, NeutralLoss loss, int columnCount) {
int offset = getOffset(charge, loss, precursorCharge);
if (type.equals(FragmentIonType.X_ION)
|| type.equals(FragmentIonType.Y_ION)
|| type.equals(FragmentIonType.Z_ION)) {
return offset;
} else if (type.equals(FragmentIonType.A_ION)
|| type.equals(FragmentIonType.B_ION)
|| type.equals(FragmentIonType.C_ION)) {
return columnCount / 2 + offset;
} else {
return -1;
}
}
