private DasComponentFeature getTranscript(
String transcriptID, int startI, int stopI, DasComponentFeature gene)
throws DataSourceException {
for (DasComponentFeature feature : gene.getReportableSubComponents())
if (feature.getFeatureId().equals(transcriptID)) return feature;
return gene.addSubComponent(
transcriptID,
startI,
stopI,
startI,
stopI,
transcriptID,
this.transcriptType,
transcriptID,
transcriptID,
method,
null,
null,
null,
null,
null);
}
private DasComponentFeature getExon(
String exonID, int startI, int stopI, DasComponentFeature transcript)
throws DataSourceException {
for (DasComponentFeature feature : transcript.getReportableSubComponents())
if (feature.getFeatureId().equals(exonID)) return feature;
return transcript.addSubComponent(
exonID,
startI,
stopI,
startI,
stopI,
exonID,
this.exonType,
exonID,
exonID,
method,
null,
null,
null,
null,
null);
}