@Test
public void testConvertToPdf() {
try {
OdfTextDocument oDoc =
uk.ac.bbsrc.tgac.miso.core.util.FormUtils.createSampleDeliveryForm(
generateSamples(), testSampleDeliveryFile, false);
uk.ac.bbsrc.tgac.miso.core.util.FormUtils.convertToPDF(oDoc);
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
}
}
@Test
public void testCreateSampleDeliveryForm() {
try {
uk.ac.bbsrc.tgac.miso.core.util.FormUtils.createSampleDeliveryForm(
generateSamples(), testSampleDeliveryFile, true);
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
}
}
@Test
public void testImportSampleDeliveryForm() {
try {
List<Sample> samples =
uk.ac.bbsrc.tgac.miso.core.util.FormUtils.importSampleDeliveryForm(testFile);
int numExpected = generateSamples().size();
if (samples.size() != numExpected) {
log.error("Expected samples in: " + numExpected + ". Number imported: " + samples.size());
TestCase.fail();
} else {
log.info("Expected samples in: " + numExpected + ". Number imported: " + samples.size());
}
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
}
}
public JSONObject downloadPlateInputForm(HttpSession session, JSONObject json) {
if (json.has("documentFormat")) {
String documentFormat = json.getString("documentFormat");
try {
File f =
misoFileManager.getNewFile(
Plate.class,
"forms",
"PlateInputForm-" + LimsUtils.getCurrentDateAsString() + "." + documentFormat);
FormUtils.createPlateInputSpreadsheet(f);
return JSONUtils.SimpleJSONResponse("" + f.getName().hashCode());
} catch (Exception e) {
e.printStackTrace();
return JSONUtils.SimpleJSONError("Failed to get plate input form: " + e.getMessage());
}
} else {
return JSONUtils.SimpleJSONError("Missing project ID or document format supplied.");
}
}
@Test
public void testImportBulkInputXLS() {
try {
InputStream in =
FormUtilsTests.class.getClassLoader().getResourceAsStream("test-bulk_input.xlsx");
LimsUtils.writeFile(in, testSampleBulkInputXlsFile);
User u = new UserImpl();
u.setLoginName("testBulkImportUser");
List<Sample> samples =
FormUtils.importSampleInputSpreadsheet(
testSampleBulkInputXlsFile,
u,
new MockFormTestRequestManager(),
new DefaultLibraryNamingScheme());
log.info("Imported :: " + LimsUtils.join(samples, " | "));
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
} finally {
testSampleBulkInputXlsFile.delete();
}
}