private int countSeq(Structure recordStruct) throws IOException {
int total = 0;
int count = 0;
int max = 0;
StructureDataIterator iter = recordStruct.getStructureIterator();
try {
while (iter.hasNext()) {
StructureData sdata = iter.next();
ArraySequence seq1 = sdata.getArraySequence("seq1");
int n = seq1.getStructureDataCount();
total += n;
count++;
max = Math.max(max, n);
}
} finally {
iter.finish();
}
double avg = total / count;
int wasted = count * max - total;
double wp = (double) wasted / (count * max);
System.out.println(" Max = " + max + " avg = " + avg + " wasted = " + wasted + " %= " + wp);
return max;
}
private double copyVarData(NetcdfFileWriteable ncfile, Structure recordStruct)
throws IOException, InvalidRangeException {
int nrecs = (int) recordStruct.getSize();
int sdataSize = recordStruct.getElementSize();
double total = 0;
double totalRecordBytes = 0;
for (int count = 0; count < nrecs; count++) {
StructureData recordData = recordStruct.readStructure(count);
for (StructureMembers.Member m : recordData.getMembers()) {
if (m.getDataType() == DataType.STRUCTURE) {
int countLevel = 0;
ArrayStructure seq1 = recordData.getArrayStructure(m);
StructureDataIterator iter = seq1.getStructureDataIterator();
try {
while (iter.hasNext()) {
StructureData seqData = iter.next();
for (StructureMembers.Member seqm : seqData.getMembers()) {
Array data = seqData.getArray(seqm);
int[] shape = data.getShape();
int[] newShape = new int[data.getRank() + 2];
newShape[0] = 1;
newShape[1] = 1;
for (int i = 0; i < data.getRank(); i++) newShape[i + 1] = shape[i];
int[] origin = new int[data.getRank() + 2];
origin[0] = count;
origin[1] = countLevel;
String mname = seqm.getName() + "-" + m.getName();
if (debug && (count == 0) && (countLevel == 0))
System.out.println("write to = " + mname);
ncfile.write(mname, origin, data.reshape(newShape));
}
countLevel++;
}
} finally {
iter.finish();
}
} else {
Array data = recordData.getArray(m);
int[] shape = data.getShape();
int[] newShape = new int[data.getRank() + 1];
newShape[0] = 1;
for (int i = 0; i < data.getRank(); i++) newShape[i + 1] = shape[i];
int[] origin = new int[data.getRank() + 1];
origin[0] = count;
if (debug && (count == 0)) System.out.println("write to = " + m.getName());
ncfile.write(m.getName(), origin, data.reshape(newShape));
}
}
totalRecordBytes += sdataSize;
}
total += totalRecordBytes;
totalRecordBytes /= 1000 * 1000;
if (debug)
System.out.println(
"write record var; total = " + totalRecordBytes + " Mbytes # recs=" + nrecs);
return total;
}