@Test
public void testServerSearchByAttributeSetCommand() throws Exception {
g = loadOntology("../OWLTools-Sim/src/test/resources/sim/mp-subset-1.obo");
ABoxUtils.createRandomClassAssertions(g.getSourceOntology(), 200, 20);
OwlSimFactory owlSimFactory = new FastOwlSimFactory();
OwlSim sos = owlSimFactory.createOwlSim(g.getSourceOntology());
sos.createElementAttributeMapFromOntology();
final HttpUriRequest httppost = createSearchByAttributeSetRequest(5);
runServerCommunication(httppost, sos);
}
@Test
public void testServerGetAnnotationSufficiencyScoreCommandBad() throws Exception {
g = loadOntology("../OWLTools-Sim/src/test/resources/sim/mp-subset-1.obo");
ABoxUtils.createRandomClassAssertions(g.getSourceOntology(), 200, 20);
// set sim
OwlSimFactory owlSimFactory = new FastOwlSimFactory();
OwlSim sos = owlSimFactory.createOwlSim(g.getSourceOntology());
sos.createElementAttributeMapFromOntology();
HttpUriRequest httppost = createBogusAnnotSufRequest(5);
runServerCommunication(httppost, sos);
}
@Test
public void testServerGetCoAnnotationSuggestions() throws Exception {
g = loadOntology("../OWLTools-Sim/src/test/resources/sim/mp-subset-1.obo");
String file = "../OWLTools-Sim/src/test/resources/sim/mgi-gene2mp-subset-1.tbl";
// g = loadOntology("/Users/Nicole/work/MONARCH/phenotype-ontologies/src/ontology/hp.obo");
// String
// file="/Users/Nicole/work/MONARCH/phenotype-ontologies/data/Homo_sapiens/Hs-disease-to-phenotype-O.txt";
TableToAxiomConverter ttac = new TableToAxiomConverter(g);
ttac.config.axiomType = AxiomType.CLASS_ASSERTION;
ttac.config.isSwitchSubjectObject = true;
ttac.parse(file);
OwlSimFactory owlSimFactory = new FastOwlSimFactory();
OwlSim sos = owlSimFactory.createOwlSim(g.getSourceOntology());
sos.createElementAttributeMapFromOntology();
// sos.populateFullCoannotationMatrix();
LOG.info("Finished populating the big matrix");
HttpUriRequest httppost = createGoodCoAnnotationRequest(1);
runServerCommunication(httppost, sos);
}