@Override
protected void processInput(String keggGeneId, String keggGeneRecord, Resource output) {
Map<String, String> recordSections = KeggUtils.getSectionsFromKeggRecord(keggGeneRecord);
StrTokenizer tokenizer = new StrTokenizer();
if (recordSections.containsKey(PATHWAY_RECORD_SECTION)) {
for (String line : recordSections.get(PATHWAY_RECORD_SECTION).split("\\r?\\n")) {
String keggPathwayId = tokenizer.reset(line).nextToken();
Resource keggPathwayNode =
LSRNUtils.createInstance(
output.getModel(), LSRNUtils.getClass(LSRN.Namespace.KEGG_PATHWAY), keggPathwayId);
output.addProperty(SIO.is_participant_in, keggPathwayNode);
}
}
}
@Override
protected Resource getInputLSRNIdentifierType() {
return LSRNUtils.getIdentifierClass(LSRN.Namespace.KEGG_GENE);
}