private Encounter buildEncounter(
EncounterType encounterType,
Patient patient,
Location location,
Form form,
Date when,
List<Obs> obsToCreate,
List<Order> ordersToCreate) {
Encounter encounter = new Encounter();
encounter.setPatient(patient);
encounter.setEncounterType(encounterType);
encounter.setLocation(location);
encounter.setForm(form);
encounter.setEncounterDatetime(when);
if (obsToCreate != null) {
for (Obs obs : obsToCreate) {
obs.setObsDatetime(new Date());
encounter.addObs(obs);
}
}
if (ordersToCreate != null) {
for (Order order : ordersToCreate) {
encounter.addOrder(order);
}
}
return encounter;
}
/**
* Adds a new encounter with the given observations and orders.
*
* @param observations a list of observations
* @param orderUuids a list of order UUIDs
* @param patient the patient for whom to add the encounter
* @param encounterTime the time of the encounter
* @param changeMessage a message to be recorded with the observation
* @param encounterTypeName the OpenMRS name for the encounter type, configured in OpenMRS
* @param locationUuid the UUID of the location where the encounter happened
*/
public static Encounter addEncounter(
List observations,
List orderUuids,
Patient patient,
Date encounterTime,
String changeMessage,
String encounterTypeName,
String locationUuid) {
// OpenMRS will reject the encounter if the time is in the past, even if
// the client's clock is off by only one millisecond; work around this.
encounterTime = Utils.fixEncounterDateTime(encounterTime);
EncounterService encounterService = Context.getEncounterService();
final Location location = Context.getLocationService().getLocationByUuid(locationUuid);
if (location == null) {
throw new InvalidObjectDataException("Location not found: " + locationUuid);
}
EncounterType encounterType = encounterService.getEncounterType(encounterTypeName);
if (encounterType == null) {
throw new InvalidObjectDataException("Encounter type not found: " + encounterTypeName);
}
List<Obs> obsList = new ArrayList<>();
if (observations != null) {
for (Object observation : observations) {
obsList.add(jsonObservationToObs(observation, patient, encounterTime, location));
}
}
if (orderUuids != null) {
for (Object item : orderUuids) {
obsList.add(orderUuidToObs((String) item, patient, encounterTime, location));
}
}
// Write the encounter and all the observations to the database.
Encounter encounter = new Encounter();
encounter.setEncounterDatetime(encounterTime);
encounter.setPatient(patient);
encounter.setLocation(location);
encounter.setEncounterType(encounterType);
encounter = encounterService.saveEncounter(encounter);
ObsService obsService = Context.getObsService();
for (Obs obs : obsList) {
if (obs != null) {
encounter.addObs(obs);
obsService.saveObs(obs, changeMessage);
}
}
return encounter;
}
@RequestMapping("/module/hirifxray/uploadXray.form")
public String uploadXray(
ModelMap model,
@RequestParam(value = "patientId", required = true) Patient patient,
@RequestParam(value = "xrayId", required = false) Encounter encounter,
@RequestParam(value = "xrayDate", required = false) Date encounterDate,
@RequestParam(value = "type", required = true) Concept type,
@RequestParam(value = "status", required = false) Concept status,
@RequestParam(value = "location", required = false) Concept location,
@RequestParam(value = "xrayFile", required = false) MultipartFile xrayFile)
throws Exception {
ComplexData xrayData = null;
if (xrayFile != null && !xrayFile.isEmpty()) {
String identifier = patient.getPatientIdentifier().getIdentifier();
String[] fileParts = xrayFile.getOriginalFilename().split("\\.");
String xrayKey = identifier + "_" + type + "." + fileParts[fileParts.length - 1];
xrayData = new ComplexData(xrayKey, xrayFile.getInputStream());
}
if (encounter == null) {
encounter = new Encounter();
encounter.setPatient(patient);
encounter.setEncounterType(HirifMetadata.getEncounterType());
}
encounter.setEncounterDatetime(
encounterDate == null ? HirifUtil.dateMidnight() : encounterDate);
HirifUtil.updateCodedObs(encounter, HirifMetadata.getXrayTypeConcept(), type);
HirifUtil.updateCodedObs(encounter, HirifMetadata.getXrayStatusConcept(), status);
HirifUtil.updateCodedObs(encounter, HirifMetadata.getXrayLocationConcept(), location);
HirifUtil.updateComplexObs(encounter, HirifMetadata.getXrayImageConcept(), xrayData);
encounter = Context.getEncounterService().saveEncounter(encounter);
return "redirect:/module/hirifxray/participant.form?id="
+ patient.getPatientId()
+ "&type="
+ type
+ "&xrayId="
+ encounter.getEncounterId();
}
@Test
public void shouldEvaluateOBRORUR01TemplateForOBSGroup() throws Exception {
// given
Encounter encounter = new Encounter();
Date date = new Date();
encounter.setEncounterDatetime(date);
encounter.setUuid("ENCOUNTER UUID");
EncounterType encounterType = new EncounterType();
encounterType.setName("ENCOUNTER TYPE NAME");
encounter.setEncounterType(encounterType);
Location location = new Location(1);
location.setUuid("LOCATION UUID");
location.setName("LOCATION NAME");
encounter.setLocation(location);
Person provider = new Person(1);
provider.setUuid("PROVIDER UUID");
provider.addName(
new PersonName("PROVIDER GIVENNAME", "PROVIDER MIDDLENAME", "PROVIDER FAMILYNAME"));
encounter.setProvider(provider);
ConceptSource source = new ConceptSource();
source.setName("AMPATH");
ConceptMap map = new ConceptMap();
map.setSourceCode("200");
map.setSource(source);
ConceptDatatype datatype = new ConceptDatatype();
datatype.setUuid(ConceptDatatype.NUMERIC_UUID);
datatype.setHl7Abbreviation(ConceptDatatype.NUMERIC);
ConceptNumeric concept = new ConceptNumeric();
concept.setDatatype(datatype);
concept.addConceptMapping(map);
concept.addName(new ConceptName("NumericConcept", Locale.ENGLISH));
concept.setUnits("mg");
Date dateCreated = new Date(213231421890234L);
Obs obs = new Obs(2);
obs.setConcept(concept);
obs.setDateCreated(dateCreated);
obs.setValueNumeric(10d);
obs.setObsGroup(getObsGroup());
obs.getObsGroup().addGroupMember(obs);
encounter.addObs(obs);
obs = new Obs(3);
obs.setConcept(concept);
obs.setDateCreated(dateCreated);
obs.setValueNumeric(23d);
encounter.addObs(obs);
Map<String, Object> bindings = new HashMap<String, Object>();
bindings.put("encounter", encounter);
bindings.put("implementationId", "MVP");
// when
HL7Template hl7Template = hl7QueryService.getHL7TemplateByName("Generic Obs Group");
String evaluatedTemplate = hl7QueryService.evaluateTemplate(hl7Template, bindings);
// then
evaluatedTemplate = StringUtils.deleteWhitespace(evaluatedTemplate);
Assert.assertEquals(
"<ORU_R01.ORDER_OBSERVATION><OBR><OBR.1>0</OBR.1><OBR.4><CE.1>100</CE.1>"
+ "<CE.2>MEDICALRECORDOBSERVATIONS</CE.2><CE.3>LOCAL</CE.3></OBR.4><OBR.18>0</OBR.18>"
+ "<OBR.29><EIP.2><EI.3>ENCOUNTERUUID</EI.3></EIP.2></OBR.29></OBR><ORU_R01.OBSERVATION>"
+ "<OBX><OBX.1>1</OBX.1><OBX.2>NM</OBX.2><OBX.3><CE.1>200</CE.1><CE.2>NumericConcept</CE.2>"
+ "<CE.3>AMPATH</CE.3></OBX.3><OBX.5>23.0</OBX.5><OBX.6><CE.1>mg</CE.1><CE.3>UCUM</CE.3></OBX.6>"
+ "<OBX.14><TS.1>"
+ new HL7TemplateFunctions().formatDate(dateCreated, null)
+ "</TS.1>"
+ "</OBX.14></OBX></ORU_R01.OBSERVATION></ORU_R01.ORDER_OBSERVATION>"
+ "<ORU_R01.ORDER_OBSERVATION><OBR><OBR.1>2</OBR.1><OBR.4><CE.1>100</CE.1><CE.2>MedSet</CE.2>"
+ "<CE.3>LOCAL</CE.3></OBR.4><OBR.18>0</OBR.18><OBR.29><EIP.2><EI.3>ENCOUNTERUUID</EI.3></EIP.2></OBR.29"
+ "></OBR><ORU_R01.OBSERVATION><OBX><OBX.1>2</OBX.1><OBX.2>NM</OBX.2><OBX.3><CE.1>200</CE.1>"
+ "<CE.2>NumericConcept</CE.2><CE.3>AMPATH</CE.3></OBX.3><OBX.5>10.0</OBX.5><OBX.6><CE.1>mg</CE.1>"
+ "<CE.3>UCUM</CE.3></OBX.6><OBX.14><TS.1>"
+ new HL7TemplateFunctions().formatDate(dateCreated, null)
+ "</TS.1></OBX.14></OBX></ORU_R01.OBSERVATION></ORU_R01.ORDER_OBSERVATION>",
evaluatedTemplate);
}
