private boolean haveSomeOrAllNonRepeatableOutputParameterValues() {
InstrumentType instrumentType = getInstrumentType();
InstrumentRun instrumentRun = activeInstrumentRunService.getInstrumentRun();
for (InstrumentOutputParameter instrumentOutputParameter :
instrumentType.getOutputParameters()) {
InstrumentRunValue instrumentRunValue =
instrumentRun.getInstrumentRunValue(instrumentOutputParameter);
if (instrumentRunValue != null) {
if (instrumentRunValue.getData(instrumentOutputParameter.getDataType()).getValue() != null)
return true;
}
}
return false; // No values found
}
private boolean haveSomeOrAllRepeatingOutputParameterValues() {
InstrumentType instrumentType = getInstrumentType();
InstrumentRun instrumentRun = activeInstrumentRunService.getInstrumentRun();
Participant participant = activeInstrumentRunService.getParticipant();
if (instrumentType.getExpectedMeasureCount(participant) == 0) return false; // No values
for (Measure measure : instrumentRun.getMeasures()) {
InstrumentRun measureInstrumentRun = measure.getInstrumentRun();
for (InstrumentOutputParameter instrumentOutputParameter :
instrumentType.getOutputParameters()) {
InstrumentRunValue instrumentRunValue =
measureInstrumentRun.getInstrumentRunValue(instrumentOutputParameter);
if (instrumentRunValue != null) {
if (instrumentRunValue.getData(instrumentOutputParameter.getDataType()).getValue()
!= null) return true;
}
}
}
return false; // No values found
}
/**
* Convert the value from a source unit to a target unit Note: if the value is an age, the method
* adjusts the value to return the right age
*
* @param activeInstrumentRunService
* @param targetInstrumentRunValue
* @param sourceInstrumentRunValue
*/
@SuppressWarnings("unchecked")
public void convert(
ActiveInstrumentRunService activeInstrumentRunService,
InstrumentRunValue targetInstrumentRunValue,
InstrumentRunValue sourceInstrumentRunValue) {
InstrumentParameter sourceParameter =
activeInstrumentRunService
.getInstrumentType()
.getInstrumentParameter(sourceInstrumentRunValue.getInstrumentParameter());
InstrumentParameter targetParameter =
activeInstrumentRunService
.getInstrumentType()
.getInstrumentParameter(targetInstrumentRunValue.getInstrumentParameter());
log.debug(
"Converting parameters from source {} to target {}", sourceParameter, targetParameter);
Unit sourceUnit = Unit.valueOf(sourceParameter.getMeasurementUnit());
Unit targetUnit = Unit.valueOf(targetParameter.getMeasurementUnit());
log.debug(
"Converting units from source {} to target {}",
sourceUnit.toString(),
targetUnit.toString());
double sourceValue;
// Extract the source value and convert it to a double
try {
sourceValue =
Double.parseDouble(
sourceInstrumentRunValue.getData(sourceParameter.getDataType()).getValueAsString());
} catch (NumberFormatException e) {
Data sourceData = sourceInstrumentRunValue.getData(sourceParameter.getDataType());
log.error(
"Error converting between measurement units. Original value {} of type {} cannot be converted to a double, which is required to convert between measurement units.",
sourceData.getValueAsString(),
sourceData.getType());
throw e;
}
double newValue = sourceUnit.getConverterTo(targetUnit).convert(sourceValue);
switch (activeInstrumentRunService
.getInstrumentType()
.getInstrumentParameter(targetInstrumentRunValue.getInstrumentParameter())
.getDataType()) {
case DECIMAL:
targetInstrumentRunValue.setData(DataBuilder.buildDecimal(newValue));
break;
case INTEGER:
if (targetUnit.toString().equalsIgnoreCase("year")) newValue = Math.floor(newValue);
targetInstrumentRunValue.setData(DataBuilder.buildInteger(Math.round(newValue)));
break;
}
}
@Override
public boolean checkParameterValue(
InstrumentParameter checkedParameter,
Data paramData,
InstrumentRunService runService,
ActiveInstrumentRunService activeRunService) {
if (parameterCode != null && (percent != null || offset != null)) {
//
// Get the other parameter's value.
//
InstrumentRunValue otherRunValue = activeRunService.getInstrumentRunValue(parameterCode);
Data otherData = null;
if (otherRunValue != null) {
otherData = otherRunValue.getData(paramData.getType());
}
if (otherData != null && otherData.getValue() != null) {
// Lazily instantiate the rangeCheck.
if (rangeCheck == null) {
rangeCheck = new RangeCheck();
}
if (checkedParameter.getDataType() == DataType.INTEGER) {
initIntegerRangeCheck(paramData, otherData);
} else if (checkedParameter.getDataType() == DataType.DECIMAL) {
initDecimalRangeCheck(paramData, otherData);
} else {
return false;
}
return rangeCheck.checkParameterValue(
checkedParameter, paramData, runService, activeRunService);
} else { // no need to check the spread if the other parameter does not yet have a value
return true;
}
} else { // nothing to check!
return true;
}
}
/**
* Convert the value from a source DataType to a target DataType (DECIMAL vs INTEGER)
*
* @param targetInstrumentRunValue
* @param sourceData
*/
@SuppressWarnings("unchecked")
public void convert(
InstrumentParameter targetInstrumentParameter,
InstrumentRunValue targetInstrumentRunValue,
Data sourceData) {
log.debug(
"Converting parameters from source {} to target {}",
sourceData.getType(),
targetInstrumentParameter.getDataType());
double newValue = Double.parseDouble(sourceData.getValueAsString());
switch (targetInstrumentParameter.getDataType()) {
case DECIMAL:
targetInstrumentRunValue.setData(DataBuilder.buildDecimal(newValue));
break;
case INTEGER:
targetInstrumentRunValue.setData(DataBuilder.buildInteger(Math.round(newValue)));
break;
}
}
/**
* Returns true if at least one interpretive parameter has a value.
*
* @return True if we have at least one interpretive parameter value.
*/
private boolean hasSomeOrAllInterpretiveParameterValues() {
InstrumentType instrumentType = getInstrumentType();
InstrumentRun instrumentRun = activeInstrumentRunService.getInstrumentRun();
for (InterpretativeParameter interpretiveParameter :
instrumentType.getInterpretativeParameters()) {
InstrumentRunValue instrumentRunValue =
instrumentRun.getInstrumentRunValue(interpretiveParameter);
if (instrumentRunValue != null) {
if (instrumentRunValue.getData(interpretiveParameter.getDataType()).getValue() != null)
return true;
}
}
for (InstrumentInputParameter instrumentInputParameter :
instrumentType.getInputParameters(false)) {
InstrumentRunValue instrumentRunValue =
instrumentRun.getInstrumentRunValue(instrumentInputParameter);
if (instrumentRunValue != null) {
if (instrumentRunValue.getData(instrumentInputParameter.getDataType()).getValue() != null)
return true;
}
}
return false;
}
/**
* Returns <code>true</code> if the specified instrument run value is equal to the value of the
* configured other parameter.
*
* @param runValue instrument run value
* @param runService instrument run service
* @return <code>true</code> if instrument run value equals value of configured other parameter
*/
public boolean checkParameterValue(
InstrumentParameter checkedParameter,
Data paramData,
InstrumentRunService runService,
ActiveInstrumentRunService activeRunService) {
// If the other parameter has not been specified, there is nothing to check!
if (parameterCode == null) {
return true;
}
//
// Get the other parameter's value.
//
log.debug("Retrieving parameter value : {}", parameterCode);
InstrumentRunValue otherRunValue = activeRunService.getInstrumentRunValue(parameterCode);
Data otherData = null;
if (otherRunValue != null) {
InstrumentParameter otherParam =
activeRunService
.getInstrumentType()
.getInstrumentParameter(otherRunValue.getInstrumentParameter());
if (!otherParam.getDataType().equals(paramData.getType())) {
InstrumentRunValue targetRunValue = new InstrumentRunValue();
targetRunValue.setInstrumentParameter(checkedParameter.getCode());
UnitParameterValueConverter converter = new UnitParameterValueConverter();
converter.convert(activeRunService, targetRunValue, otherRunValue);
otherData = targetRunValue.getData(paramData.getType());
} else {
InstrumentParameter otherParameter =
activeRunService.getInstrumentType().getInstrumentParameter(parameterCode);
otherData = otherRunValue.getData(otherParameter.getDataType());
}
} else {
log.debug("Value is : null");
}
// Lazily instantiate the equalsValueCheck.
EqualsValueCheck equalsValueCheck = new EqualsValueCheck();
// Update the equalsValueCheck accordingly.
equalsValueCheck.setData(otherData);
equalsValueCheck.setOperator(operator);
return equalsValueCheck.checkParameterValue(
checkedParameter, paramData, runService, activeRunService);
}
