@Override
public Repository createDecoratedRepository(Repository repository) {
Repository decoratedRepository = repositoryDecoratorRegistry.decorate(repository);
if (decoratedRepository.getName().equals(MolgenisUserMetaData.ENTITY_NAME)) {
decoratedRepository = new MolgenisUserDecorator(decoratedRepository);
}
// 9. Owned decorator
if (EntityUtils.doesExtend(
decoratedRepository.getEntityMetaData(), OwnedEntityMetaData.ENTITY_NAME)) {
decoratedRepository = new OwnedEntityRepositoryDecorator(decoratedRepository);
}
// 8. Entity reference resolver decorator
decoratedRepository = new EntityReferenceResolverDecorator(decoratedRepository, entityManager);
// 7. Computed entity values decorator
decoratedRepository = new ComputedEntityValuesDecorator(decoratedRepository);
// 6. Entity listener
decoratedRepository = new EntityListenerRepositoryDecorator(decoratedRepository);
// 5. Transaction log decorator
decoratedRepository =
new TransactionLogRepositoryDecorator(decoratedRepository, transactionLogService);
// 4. SQL exception translation decorator
String backend = decoratedRepository.getEntityMetaData().getBackend();
if (MysqlRepositoryCollection.NAME.equals(backend)) {
decoratedRepository = new MySqlRepositoryExceptionTranslatorDecorator(decoratedRepository);
}
// 3. validation decorator
decoratedRepository =
new RepositoryValidationDecorator(
dataService, decoratedRepository, entityAttributesValidator, expressionValidator);
// 2. auto value decorator
decoratedRepository = new AutoValueRepositoryDecorator(decoratedRepository, idGenerator);
// 1. security decorator
decoratedRepository = new RepositorySecurityDecorator(decoratedRepository, appSettings);
return decoratedRepository;
}
private void validateEntityValueRequired(Entity entity, ValidationResource validationResource) {
validationResource
.getRequiredValueAttrs()
.forEach(
nonNillableAttr -> {
Object value = entity.get(nonNillableAttr.getName());
if (value == null
|| (nonNillableAttr.getDataType() instanceof MrefField
&& !entity.getEntities(nonNillableAttr.getName()).iterator().hasNext())) {
boolean isValid = false;
// FIXME remove hack (see https://github.com/molgenis/molgenis/issues/4308)
// Do not validate if Questionnaire status is not SUBMITTED
if (EntityUtils.doesExtend(getEntityMetaData(), "Questionnaire")
&& !"SUBMITTED".equals(entity.getString("status"))) {
isValid = true;
}
// Do not validate if visibleExpression resolves to false
else if (nonNillableAttr.getVisibleExpression() != null
&& !expressionValidator.resolveBooleanExpression(
nonNillableAttr.getVisibleExpression(), entity, getEntityMetaData())) {
isValid = true;
}
if (!isValid) {
String message =
format(
"The attribute '%s' of entity '%s' can not be null.",
nonNillableAttr.getName(), getName());
ConstraintViolation constraintViolation =
new ConstraintViolation(
message, nonNillableAttr, Long.valueOf(validationResource.getRow()));
validationResource.addViolation(constraintViolation);
}
}
});
}
private boolean hasValues(Entity e) {
return !EntityUtils.isEmpty(e);
}