/**
* Get the amino acid sequence (translate) for a spliced nucleotide sequence
*
* @param nuclSequence
* @return amino acid sequence
*/
public static String translate(String nuclSequence) {
String aaSequence = "";
for (int i = 0; i < nuclSequence.length() - 1; i = i + 3) {
String codon = StringUtils.substring(nuclSequence, i, i + 3);
aaSequence = aaSequence + SequenceUtils.getAminoAcid3(codon);
}
return aaSequence;
}
