MolgenisUserViewData(MolgenisUser mu, List<MolgenisGroup> molgenisGroups) {
this(mu.getId(), mu.getUsername());
firstName = (null == mu.getFirstName() ? "" : mu.getFirstName());
middleName = (null == mu.getMiddleNames() ? "" : mu.getMiddleNames());
lastName = (null == mu.getLastName() ? "" : mu.getLastName());
fullName = firstName + ' ' + middleName + ' ' + lastName;
this.active = mu.isActive();
this.superuser = mu.isSuperuser();
for (MolgenisGroup mg : molgenisGroups) {
this.groupList.add(mg.getId());
}
}
/**
* Imports MolgenisGroup from tab/comma delimited File.
*
* @param MolgenisGroupFile a tab delimited file with MolgenisGroup data.
*/
private static void importMolgenisGroup(Database db, File MolgenisGroupFile)
throws DatabaseException, IOException, Exception {
logger.debug("trying to import " + MolgenisGroupFile);
if (!MolgenisGroupFile.exists()) {
logger.warn("MolgenisGroup.txt file is missing, skipped import");
} else {
// read MolgenisGroup from file
CsvReader reader = new CsvFileReader(MolgenisGroupFile);
List<MolgenisGroup> molgenisGroupList =
db.toList(MolgenisGroup.class, reader, Integer.MAX_VALUE); // should have no limit
logger.debug("loaded " + molgenisGroupList.size() + " MolgenisGroup objects");
// redirect incoming and outgoing fkeys
List<Integer> molgenisGroupIds = new ArrayList<Integer>(); // also doesn't scale
for (int i = 0;
i < molgenisGroupList.size();
i++) // sorry, not a real list so need to put back!!
{
MolgenisGroup object = molgenisGroupList.get(i);
// remember index of this id for incoming fkeys
molgenisGroupIds.add(object.getId());
// redirect outgoing fkeys
// add assay back to list
molgenisGroupList.set(i, object);
}
// add to database
db.add(molgenisGroupList);
for (int i = 0; i < molgenisGroupList.size(); i++) {
molgenisGroupIdMap.put(molgenisGroupIds.get(i), molgenisGroupList.get(i).getId());
molgenisRoleIdMap.put(molgenisGroupIds.get(i), molgenisGroupList.get(i).getId());
}
}
}