private List<CyNetworkView> getViews(String file) throws Exception {
final SIFNetworkReader snvp = readFile(file);
final CyNetwork[] networks = snvp.getNetworks();
final List<CyNetworkView> views = new ArrayList<CyNetworkView>();
for (CyNetwork network : networks) {
views.add(snvp.buildCyNetworkView(network));
}
return views;
}
private SIFNetworkReader readFile(String file) throws Exception {
File f = new File("./src/test/resources/testData/sif/" + file);
SIFNetworkReader snvp =
new SIFNetworkReader(
new FileInputStream(f),
layouts,
viewFactory,
netFactory,
this.networkManager,
this.rootNetworkManager);
new TaskIterator(snvp);
snvp.run(taskMonitor);
return snvp;
}
private CyNetwork[] getNetworks(String file) throws Exception {
final SIFNetworkReader snvp = readFile(file);
return snvp.getNetworks();
}