@Override
public AnonymousEntityDescription convertTo(
ResolvedConceptReference source, AnonymousEntityDescription target) {
if (StringUtils.isBlank(source.getCode()) || StringUtils.isBlank(source.getCodeNamespace())) {
return target;
}
CodingScheme cs =
codingSchemeService.getCodingSchemeByUriAndVersion(
source.getCodingSchemeURI(), source.getCodingSchemeVersion());
for (org.LexGrid.concepts.Comment c : source.getEntity().getComment()) {
org.cts2.core.Comment comment = this.baseDozerBeanMapper.map(c, org.cts2.core.Comment.class);
// process supported mappings
if (cs != null) {
if (comment.getFormat() != null && !StringUtils.isEmpty(comment.getFormat().getContent())) {
SupportedDataType supportedDataType =
DaoUtility.getURIMap(cs, SupportedDataType.class, comment.getFormat().getContent());
if (supportedDataType != null) comment.getFormat().setMeaning(supportedDataType.getUri());
}
if (comment.getLanguage() != null
&& !StringUtils.isEmpty(comment.getLanguage().getContent())) {
SupportedLanguage supportedLanguage =
DaoUtility.getURIMap(cs, SupportedLanguage.class, comment.getLanguage().getContent());
if (supportedLanguage != null)
comment.getLanguage().setMeaning(supportedLanguage.getUri());
}
}
target.addNote(comment);
}
return target;
}
public void run() throws LBException {
ValueSetDefinition vsd = Util.promptForValueSetDefinition(message);
if (vsd != null) {
AbsoluteCodingSchemeVersionReferenceList acsvList = null;
Util.displayMessage("Now select Code System to use to resolve Value Set Definition");
CodingSchemeSummary css = Util.promptForCodeSystem();
if (css != null) {
acsvList = new AbsoluteCodingSchemeVersionReferenceList();
acsvList.addAbsoluteCodingSchemeVersionReference(
Constructors.createAbsoluteCodingSchemeVersionReference(
css.getCodingSchemeURI(), css.getRepresentsVersion()));
}
LexEVSValueSetDefinitionServices vsdServ =
LexEVSValueSetDefinitionServicesImpl.defaultInstance();
ResolvedValueSetDefinition rVSD = null;
try {
rVSD =
vsdServ.resolveValueSetDefinition(
new URI(vsd.getValueSetDefinitionURI()), null, acsvList, null, null);
} catch (URISyntaxException e) {
e.printStackTrace();
}
if (rVSD != null) {
Util.displayMessage(
"Member of Value Set Definition (" + vsd.getValueSetDefinitionURI() + ") are :");
ResolvedConceptReferencesIterator conceptItr = rVSD.getResolvedConceptReferenceIterator();
while (conceptItr.hasNext()) {
ResolvedConceptReference concept = conceptItr.next();
Util.displayMessage("Concept code : " + concept.getCode());
Util.displayMessage("\tCoding Scheme Name...: " + concept.getCodingSchemeName());
Util.displayMessage("\tCoding Scheme URI....: " + concept.getCodingSchemeURI());
Util.displayMessage("\tCoding Scheme Version: " + concept.getCodingSchemeVersion());
}
} else {
Util.displayMessage(
"No members found for Value Set Definition : '" + vsd.getValueSetDefinitionURI() + "'");
}
}
}
/**
* Returns list of Child Concepts
*
* @param ref
* @return
*/
public Vector<String> getChildConcepts(ResolvedConceptReference ref) throws Exception {
String code = ref.getCode();
Vector<String> supconcepts = getAssociatedConcepts(code, false);
return supconcepts;
}