/** {@inheritDoc} */
@Override
public void loadAdditionalSettingsFrom(
final NodeSettingsRO settings, final PortObjectSpec[] specs) throws NotConfigurableException {
IntensityBins bins = null;
try {
bins = new IntensityBins(settings.getNodeSettings(IntensityBinnerNodeModel.KEY_BIN_SETTINGS));
} catch (InvalidSettingsException e) {
// TODO
throw new NotConfigurableException(e.getMessage(), e);
}
m_intervalPanel.removeAllIntervalItems();
for (int i = 0; i < bins.getNumBins(); i++) {
double binValue = bins.getBinValue(i);
boolean leftOpen = bins.isLeftOpen(i);
double left = bins.getLeftValue(i);
boolean rightOpen = bins.isRightOpen(i);
double right = bins.getRightValue(i);
IntervalItemPanel item =
new IntervalItemPanel(
m_intervalPanel, leftOpen, left, rightOpen, right, binValue, DoubleCell.TYPE);
m_intervalPanel.addIntervalItem(item);
}
updateInfo();
getPanel().validate();
getPanel().repaint();
}
/** {@inheritDoc} */
@Override
protected void loadInternals(final File internDir, final ExecutionMonitor exec)
throws IOException, CanceledExecutionException {
File file = new File(internDir, "muscle-internals.xml");
FileInputStream fis = new FileInputStream(file);
ModelContentRO modelContent = ModelContent.loadFromXML(fis);
try {
String[] keys = modelContent.getStringArray("internal-muscle-map-keys");
m_muscle_map.clear();
ModelContentRO subkey = modelContent.getModelContent("internal-muscle-map");
for (String key : keys) {
DataCell dc = subkey.getDataCell(key);
if (dc instanceof MultiAlignmentCell) {
m_muscle_map.put(key, (MultiAlignmentCell) dc);
}
}
fis.close();
} catch (InvalidSettingsException e) {
throw new IOException(e.getMessage());
}
}