private static void validateMass(ISpectrumPeak pSp, double pPeak, Set<Integer> goodMasses) {
final double mass = pSp.getMassChargeRatio();
final int imass = asInt(mass);
if (!goodMasses.contains(imass)) {
// try one off
if (goodMasses.contains(imass - 1)) {
goodMasses.remove(imass - 1);
return;
}
if (goodMasses.contains(imass + 1)) {
goodMasses.remove(imass + 1);
return;
}
}
if (!goodMasses.contains(imass)) System.out.println("Missing mass " + imass);
goodMasses.remove(imass);
}
private List<String> executeDDL(
String ddlFileName,
@Nullable String dataFileName,
boolean isLocalTable,
@Nullable String[] args)
throws Exception {
Path ddlFilePath = new Path(currentQueryPath, ddlFileName);
FileSystem fs = ddlFilePath.getFileSystem(conf);
assertTrue(ddlFilePath + " existence check", fs.exists(ddlFilePath));
String template = FileUtil.readTextFile(new File(ddlFilePath.toUri()));
String dataFilePath = null;
if (dataFileName != null) {
dataFilePath = getDataSetFile(dataFileName).toString();
}
String compiled = compileTemplate(template, dataFilePath, args);
List<ParsedResult> parsedResults = SimpleParser.parseScript(compiled);
List<String> createdTableNames = new ArrayList<String>();
for (ParsedResult parsedResult : parsedResults) {
// parse a statement
Expr expr = sqlParser.parse(parsedResult.getStatement());
assertNotNull(ddlFilePath + " cannot be parsed", expr);
if (expr.getType() == OpType.CreateTable) {
CreateTable createTable = (CreateTable) expr;
String tableName = createTable.getTableName();
assertTrue("Table creation is failed.", client.updateQuery(parsedResult.getStatement()));
TableDesc createdTable = client.getTableDesc(tableName);
String createdTableName = createdTable.getName();
assertTrue(
"table '" + createdTableName + "' creation check", client.existTable(createdTableName));
if (isLocalTable) {
createdTableGlobalSet.add(createdTableName);
createdTableNames.add(tableName);
}
} else if (expr.getType() == OpType.DropTable) {
DropTable dropTable = (DropTable) expr;
String tableName = dropTable.getTableName();
assertTrue(
"table '" + tableName + "' existence check",
client.existTable(CatalogUtil.buildFQName(currentDatabase, tableName)));
assertTrue("table drop is failed.", client.updateQuery(parsedResult.getStatement()));
assertFalse(
"table '" + tableName + "' dropped check",
client.existTable(CatalogUtil.buildFQName(currentDatabase, tableName)));
if (isLocalTable) {
createdTableGlobalSet.remove(tableName);
}
} else {
assertTrue(ddlFilePath + " is not a Create or Drop Table statement", false);
}
}
return createdTableNames;
}
