private Set<ScorisQig> getScorisQigs(Structure... structures) {
MarkGroup markGroup = new MarkGroup();
for (Structure structure : structures) markGroup.getStructures().add(structure);
ScorisQig scorisQig = new ScorisQig();
scorisQig.setId(1);
scorisQig.setMarkGroup(markGroup);
Set<ScorisQig> scorisQigs = new HashSet<ScorisQig>();
scorisQigs.add(scorisQig);
return scorisQigs;
}
private Integer getTmdTolerance(QualityModel qualityModel, MarkGroup markGroup)
throws TranslatorException {
throwExceptionForNullInput(qualityModel, "qualityModel");
String qmName = qualityModel.getName();
if (QualityModel.SEEDING_TMD.equals(qmName) || QualityModel.SEEDING_AMD_TMD.equals(qmName))
return markGroup.getTmdTolerance();
else return null;
}