/**
* Normalize the input file. Write to the specified file.
*
* @param file The file to write to.
*/
public void normalize(final File file) {
if (this.analyst == null) {
throw new EncogError("Can't normalize yet, file has not been analyzed.");
}
ReadCSV csv = null;
PrintWriter tw = null;
try {
csv = new ReadCSV(getInputFilename().toString(), isExpectInputHeaders(), getFormat());
tw = new PrintWriter(new FileWriter(file));
// write headers, if needed
if (isProduceOutputHeaders()) {
writeHeaders(tw);
}
resetStatus();
final int outputLength = this.analyst.determineTotalColumns();
// write file contents
while (csv.next() && !shouldStop()) {
updateStatus(false);
double[] output =
AnalystNormalizeCSV.extractFields(
this.analyst, this.analystHeaders, csv, outputLength, false);
if (this.series.getTotalDepth() > 1) {
output = this.series.process(output);
}
if (output != null) {
final StringBuilder line = new StringBuilder();
NumberList.toList(getFormat(), line, output);
tw.println(line);
}
}
} catch (final IOException e) {
throw new QuantError(e);
} finally {
reportDone(false);
if (csv != null) {
try {
csv.close();
} catch (final Exception ex) {
EncogLogging.log(ex);
}
}
if (tw != null) {
try {
tw.close();
} catch (final Exception ex) {
EncogLogging.log(ex);
}
}
}
}
/**
* Analyze the data. This counts the records and prepares the data to be processed.
*
* @param theAnalyst The analyst to use.
* @param inputFile The input file to analyze.
* @param headers True, if the input file has headers.
* @param format The format of the input file.
*/
public void analyze(
final EncogAnalyst theAnalyst,
final File inputFile,
final boolean headers,
final CSVFormat format) {
this.setInputFilename(inputFile);
setExpectInputHeaders(headers);
setInputFormat(format);
setAnalyzed(true);
this.analyst = theAnalyst;
this.data = new BasicMLDataSet();
resetStatus();
int recordCount = 0;
final int outputLength = this.analyst.determineTotalColumns();
final ReadCSV csv =
new ReadCSV(
this.getInputFilename().toString(), this.isExpectInputHeaders(), this.getFormat());
readHeaders(csv);
this.analystHeaders = new CSVHeaders(this.getInputHeadings());
while (csv.next() && !shouldStop()) {
updateStatus(true);
final double[] inputArray =
AnalystNormalizeCSV.extractFields(analyst, this.analystHeaders, csv, outputLength, true);
final MLData input = new BasicMLData(inputArray);
this.data.add(new BasicMLDataPair(input));
recordCount++;
}
setRecordCount(recordCount);
this.setColumnCount(csv.getColumnCount());
readHeaders(csv);
csv.close();
reportDone(true);
}