/**
* Prepares the Dataset representing the search key in C-FIND. As no values are set, the keys
* match to every content in the archive. The user has to specify concret values to limit the
* searchSee PS 3.4 - C.6.2.1.2 Study level.
*
* <p>As the result for C-FIND these keys are filled with the values found in the archive.
*
* @param cfg the configuration properties for this class.
* @throws ParseException if a given properties for the keys was not found.
*/
private void initKeys(ConfigProperties cfg) throws ParseException {
// Remove all keys
keys = dof.newDataset();
// Query/Retrieve Level. PS 3.4 - C.6.2 Study Root SOP Class Group
keys.putCS(Tags.QueryRetrieveLevel, getQueryRetrieveLevel(STUDY_LEVEL));
// UNIQUE STUDY LEVEL KEY FOR THE STUDY. See PS 3.4 - C.6.2.1.2 Study level
keys.putUI(Tags.StudyInstanceUID);
// REQUIRED STUDY LEVEL KEY FOR THE STUDY. See PS 3.4 - C.6.2.1.2 Study level
keys.putDA(Tags.StudyDate);
// Not defined: StudyTime
// Not defined: AccessionNumber
keys.putPN(Tags.PatientName);
keys.putLO(Tags.PatientID);
// Not defined: StudyID
// OPTIONAL STUDY LEVEL KEY FOR THE STUDY. See PS 3.4 - C.6.2.1.2 Study level
keys.putUS(Tags.NumberOfStudyRelatedSeries);
keys.putUS(Tags.NumberOfStudyRelatedInstances);
// mutch more defined...
// Add the keys found in the configuration properties
addQueryKeys(cfg);
}
private Collection getObserverContextItems(String personName) {
Dataset ds = dof.newDataset();
ds.putCS(Tags.RelationshipType, "HAS OBS CONTEXT");
ds.putCS(Tags.ValueType, "CODE");
DcmElement cnSq = ds.putSQ(Tags.ConceptNameCodeSeq);
Dataset cnDS = cnSq.addNewItem();
cnDS.putSH(Tags.CodeValue, "121005");
cnDS.putSH(Tags.CodingSchemeDesignator, "DCM");
cnDS.putLO(Tags.CodeMeaning, "ObserverType");
DcmElement ccSq = ds.putSQ(Tags.ConceptCodeSeq);
Dataset ccDS = ccSq.addNewItem();
ccDS.putSH(Tags.CodeValue, "121006");
ccDS.putSH(Tags.CodingSchemeDesignator, "DCM");
ccDS.putLO(Tags.CodeMeaning, "Person");
Dataset ds1 = dof.newDataset();
ds1.putCS(Tags.RelationshipType, "HAS OBS CONTEXT");
ds1.putCS(Tags.ValueType, "PNAME");
DcmElement cnSq1 = ds1.putSQ(Tags.ConceptNameCodeSeq);
Dataset cnDS1 = cnSq1.addNewItem();
cnDS1.putSH(Tags.CodeValue, "121008");
cnDS1.putSH(Tags.CodingSchemeDesignator, "DCM");
cnDS1.putLO(Tags.CodeMeaning, "Person Observer Name");
ds1.putPN(Tags.PersonName, personName);
ArrayList col = new ArrayList();
col.add(ds);
col.add(ds1);
return col;
}
public void addWorklistItem(
Long studyPk, String templateFile, String humanPerformerCode, Long scheduleDate)
throws Exception {
String uri =
FileUtils.resolve(new File(templatePath, templateFile + ".xml")).toURI().toString();
if (log.isDebugEnabled()) log.debug("load template file: " + uri);
Dataset ds = DatasetUtils.fromXML(new InputSource(uri));
ContentManager cm = getContentManager();
// patient
Dataset patDS = cm.getPatientForStudy(studyPk.longValue());
if (log.isDebugEnabled()) {
log.debug("Patient Dataset:");
log.debug(patDS);
}
ds.putAll(patDS.subSet(PAT_ATTR_TAGS));
//
Dataset sopInstRef = cm.getSOPInstanceRefMacro(studyPk.longValue(), false);
String studyIUID = sopInstRef.getString(Tags.StudyInstanceUID);
ds.putUI(Tags.SOPInstanceUID, UIDGenerator.getInstance().createUID());
ds.putUI(Tags.StudyInstanceUID, studyIUID);
DcmElement inSq = ds.putSQ(Tags.InputInformationSeq);
inSq.addItem(sopInstRef);
// Scheduled Human Performer Seq
DcmElement schedHPSq = ds.putSQ(Tags.ScheduledHumanPerformersSeq);
Dataset item = schedHPSq.addNewItem();
DcmElement hpCodeSq = item.putSQ(Tags.HumanPerformerCodeSeq);
Dataset dsCode = (Dataset) this.humanPerformer.get(humanPerformerCode);
log.info(dsCode);
if (dsCode != null) {
hpCodeSq.addItem(dsCode);
item.putPN(Tags.HumanPerformerName, dsCode.getString(Tags.CodeMeaning));
}
// Scheduled Procedure Step Start Date and Time
ds.putDT(Tags.SPSStartDateAndTime, new Date(scheduleDate.longValue()));
if (log.isDebugEnabled()) {
log.debug("GPSPS Dataset:");
log.debug(ds);
}
addWorklistItem(ds);
}
private Dataset getStudyMgtDataset(StudyLocal study, Map mapSeries) {
Dataset ds = dof.newDataset();
ds.putUI(Tags.StudyInstanceUID, study.getStudyIuid());
ds.putOB(PrivateTags.StudyPk, Convert.toBytes(study.getPk().longValue()));
ds.putSH(Tags.AccessionNumber, study.getAccessionNumber());
ds.putLO(Tags.PatientID, study.getPatient().getPatientId());
ds.putLO(Tags.IssuerOfPatientID, study.getPatient().getIssuerOfPatientId());
ds.putPN(Tags.PatientName, study.getPatient().getPatientName());
log.debug("getStudyMgtDataset: studyIUID:" + study.getStudyIuid());
DcmElement refSeriesSeq = ds.putSQ(Tags.RefSeriesSeq);
Iterator iter =
(mapSeries == null) ? study.getSeries().iterator() : mapSeries.keySet().iterator();
while (iter.hasNext()) {
SeriesLocal sl = (SeriesLocal) iter.next();
Dataset dsSer = refSeriesSeq.addNewItem();
dsSer.putUI(Tags.SeriesInstanceUID, sl.getSeriesIuid());
Collection instances =
(mapSeries == null) ? sl.getInstances() : (Collection) mapSeries.get(sl);
Iterator iter2 = instances.iterator();
DcmElement refSopSeq = null;
if (iter2.hasNext()) refSopSeq = dsSer.putSQ(Tags.RefSOPSeq);
while (iter2.hasNext()) {
InstanceLocal il = (InstanceLocal) iter2.next();
Dataset dsInst = refSopSeq.addNewItem();
dsInst.putUI(Tags.RefSOPClassUID, il.getSopCuid());
dsInst.putUI(Tags.RefSOPInstanceUID, il.getSopIuid());
dsInst.putAE(Tags.RetrieveAET, il.getRetrieveAETs());
}
}
if (log.isDebugEnabled()) {
log.debug("return StgMgtDataset:");
log.debug(ds);
}
return ds;
}