@Override
public CyNetworkView buildCyNetworkView(final CyNetwork network) {
final CyNetworkView view = networkViewFactory.createNetworkView(network);
final CyLayoutAlgorithm layout = layouts.getDefaultLayout();
TaskIterator itr =
layout.createTaskIterator(
view, layout.getDefaultLayoutContext(), CyLayoutAlgorithm.ALL_NODE_VIEWS, "");
Task nextTask = itr.next();
try {
nextTask.run(parentTaskMonitor);
} catch (Exception e) {
throw new RuntimeException("Could not finish layout", e);
}
parentTaskMonitor.setProgress(1.0d);
return view;
}
@Before
public void setUp() throws Exception {
taskMonitor = mock(TaskMonitor.class);
CyLayoutAlgorithm def = mock(CyLayoutAlgorithm.class);
Object context = new Object();
when(def.createLayoutContext()).thenReturn(context);
when(def.getDefaultLayoutContext()).thenReturn(context);
when(def.createTaskIterator(
Mockito.any(CyNetworkView.class),
Mockito.any(Object.class),
Mockito.anySet(),
Mockito.any(String.class)))
.thenReturn(new TaskIterator(new SimpleTask()));
layouts = mock(CyLayoutAlgorithmManager.class);
when(layouts.getDefaultLayout()).thenReturn(def);
NetworkTestSupport nts = new NetworkTestSupport();
netFactory = nts.getNetworkFactory();
networkManager = nts.getNetworkManager();
rootNetworkManager = nts.getRootNetworkFactory();
cyApplicationManager = mock(CyApplicationManager.class);
properties = new Properties();
CyProperty<Properties> cyProperties =
new SimpleCyProperty<Properties>(
"Test", properties, Properties.class, SavePolicy.DO_NOT_SAVE);
NetworkViewTestSupport nvts = new NetworkViewTestSupport();
setViewThreshold(DEF_THRESHOLD);
viewFactory = nvts.getNetworkViewFactory();
readUtil = new ReadUtils(new StreamUtilImpl(cyProperties));
}